Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0286 ATGAAGCCTGAGAATTGTTGGGATTCTCAAATGGCGGACATGTTCAAAAGTTTCTGTGACGTGGGCTATGCTAAATTACCGATGGACTATTCCATGACGGTTGACGATGATTGCTTCGATTTTACGGACCTTAACGACCTTAATTCAGGAGTCTTAGTTTTGCCTGGCTTTGATGAATTTCCAGAGAGCCAACTGTGTGCGCCTCCTGACTCGCTAGGAGACTTGGAATGGTTCCCCTGCTTCTCAGGTGATTTTATAACTTCGAAAAAAAGCTCCTTTTGCTTTACCAGTGACCAATTTCATACGCATGAACGTGGGGAGAAAACGGAGCAAACAAATGGAATTGTGAATGAAGATTGGGTCGGAATTTCCGAGGTTGCAATAGGTGGCTTTACGAAGAAGAAGAGTAGGACGAAGAATAGGGCGAGACGAAGCTTGACGGGGATTGATAGAAAGAGGTGCAGCCACTGCGAGACGTTGGAGACGCCGCAATGGAGGCATGGGCCTAATGGGCCCAAGACGCTGTGCAATGCGTGTGGGATGAGGTTCAGGTCCGGAAGGCTGTTGCCGGAGTATCGTCCGGCGGCCAGTCCTACCTTCGATGAATGCAGGCATTCTAATTACCATAGGAAAATAATGGAAAAGCGAGGATTAGATTGTTAA 663 0.4736 MKPENCWDSQMADMFKSFCDVGYAKLPMDYSMTVDDDCFDFTDLNDLNSGVLVLPGFDEFPESQLCAPPDSLGDLEWFPCFSGDFITSKKSSFCFTSDQFHTHERGEKTEQTNGIVNEDWVGISEVAIGGFTKKKSRTKNRARRSLTGIDRKRCSHCETLETPQWRHGPNGPKTLCNACGMRFRSGRLLPEYRPAASPTFDECRHSNYHRKIMEKRGLDC 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0286 220 FunFam GATA transcription factor 149 198 - -
Lele18g0286 220 Gene3D - 149 199 IPR013088 GO:0006355|GO:0008270
Lele18g0286 220 CDD ZnF_GATA 153 202 IPR000679 GO:0006355|GO:0043565
Lele18g0286 220 Pfam GATA zinc finger 154 188 IPR000679 GO:0006355|GO:0043565
Lele18g0286 220 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 152 211 - -
Lele18g0286 220 SMART GATA_3 148 198 IPR000679 GO:0006355|GO:0043565
Lele18g0286 220 PANTHER GATA TRANSCRIPTION FACTOR 134 216 - -
Lele18g0286 220 ProSiteProfiles GATA-type zinc finger domain profile. 152 184 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0286 Lele-ChrLele18 1701296 1703071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0286 65 216 C2C2-Gata Transcription Factor Family AT3G60530 41.667 5.96e-35 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lele18g0286 GATA 3.3e-17 CL0167