Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0285 ATGTCTTCCTCGACGAAACCCTTATCTCTGAAGCCGAAGAGTCCCTCATCCTCCGTGACATCGAGCAACGCCAGGCTCTCGCTTCTCGCATTGCCAAATGGATCCGTCCGCATCTATCCTCCGAGTATCTTTCACAATCCTCTAGCATTAGTGAGTATTTGCAACTTCACGGTTTCTGACACCCGTGCTCTGGAGATTGATTATGTTATTGGAGAGAGTCATAAAGAGTTGCTGCCAAATTCGTCTGGACCTGCCGCCATTATTAGAATATTTGGAGTTTCGAAGGAAGGACATAGTGTTTGCTGCAATGTTCATGGATTTGAGCCATATTTTTACATCAGCTGCCCTCCTGGAATGAGACCAGATGATATTTCTGGTTTTCATAAAATCCTTGAGGGGAGGATGAAAGAGTCTAATAGAAACAGTAAAGTGCCACAATTTGTTCGTCGTATTGAAATGGTGCAGAGAAAGAGTATTATGCACTATCAGCAGCAGAACTCCCAGTCATTTTTGAAAATTGTAGTTGCACTGCCAACAATGGTTGCCAGTTGTCGAGGTATTCTTGACAGAGGCATTCAGATTGATGGCCTTGGCATGAAGAGTTTTATGACTTACGAAAGCAATATTCTGTTTGCCCTTCGTTTCATGATTGATTGCAATATAGTTGGTGGAAATTGGATTGAAGTACCTGCTGGAAAATACAAGAAGACAGCAAAGAACTTGTCTTACTGCCAATTAGAGTTTGACTGCCTGTATTCAGTGTTGATTAGCCATGCACCAGAAGGGCATTTTTCAAAGATGGCTCCATTTCGCATATTGAGTTTTGATATTGAGTGTGCTGGTCGCAAAGGTCATTTTCCTGAACCTACTCAAGATCCTGTTATCCAGATTGCCAACCTGGTCACATTGCAAGGAGAAGATCAACCATTTATTCGCAATGTTATGACTCTTAAATCATGTTCACCTATAGTTGGCACTGATGTGATGTCCTTTGGTACAGAAAGAGAAGTCCTGCTAGCATGGAGGGATTTTATCCGTGAAGTGGACCCTGATATTATAATTGGATATAACATTTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTGAAGCCCTGAAAATAGCAGAATTTCCAATTCTTGGACGCATCAGGAACAGTAGAGTTCGAGTAAAAGATACAACTTTCTCATCAAGACAACTTGGGACTAGGGAAAGCAAAGAGGTTACAATAGAAGGGAGAGTTCAGTTTGACTTGCTCCAGGCTATGCAGCGAGATTACAAACTAAGTTCTTATTCATTGAATTCTGTTTCAGCACACTTCCTCTCAGAGCAGATTAAGTTTCAGATTTTAATGCATAAGCTATTGATGTGGTGTTTACCTAATGCCGTAGCTTGTACAACTTTTGTCTCTAATGTTACTTTGAAAGAGGATGTTCACCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGATACTAGGAGACGCCTTGCTGTGTATTGTTTGAAGGATGCATATCTCCCTCAACGACTGTTGGATAAATTGATGTTTATTTACAATTATGTGGAGATGGCTCGAGTAACTGGTGTTCCAATTTCTTTTTTACTTTCTAGAGGGCAAAGCATTAAGGTATTGTCTCAACTTCTTAGGAAGGCAAAACAGAAGAACTTGGTTATTCCTAATGTCAAACGAGCTGGGTCAGAACAAGGAACATATGAAGGTGCCACTGTATTGGAAGCAAGAGCTGGATTCTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCCTTGTATCCATCTATTATGATGGCATATAATCTATGCTACTGCTCTCTGGTGACCCCGGAAGATGTTCGCAAGCTCAACCTACCTCCAGAGTCTGTAAACAAAACTCCATCTGGTGAAATGTTTGTTAAATCAAATTTACAGAAGGAGGCAAAAGATCCTCTTGAGAAGGCTGTGCTGGATGGTCGACAGCTGGCTCTAAAGGTCAGCGCTAATTCTGTATATGGGTTTACAGGGGCTACTGTTGGTCAGTTACCTTGCATAGAGATATCTTCAAGTGTAACAAGCTATGAGTTTGATGATCGCATAAATTTGATGCCCTGTAAAGGTCGGCAAATGATTGAGCACACAAAAAGACTTGTGGAAGATAAATTTACAACACTCAATGGTTATGAGAACAATGCTGAGGTCATATATGGAGACACTGATTCAGTCATGGTACAATTTGGTGTTTCCTCTGTAGAAGAGGCAATGAAATTAGGGAGAGAGGCTGCTGAATATATAAGTAGAACTTTCATTAAAATGGACACTAAAGGGATTGAGACAGTTCGAAGAGATAATTGTTTATTGGTAAAGAACCTGGTCAATGACTGCCTTCACAAAATTCTGATTGACAGAGACATCCCTGGGGCAGTCCAGCATGTAAAGAATGCAATTTCAGATCTACTCATGAACCGCATGGATTTGTCACTTCTGGTCATTACAAAGGGTTTGACCAAGACAGGAGATGATTATGAAGTAAAAGCAGCTCACGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCCGCCACTGCTCCAAATGTTGGTGATAGAGTACCTTACGTCATAATTAAAGCTGCAAAGGGTGCCAAGGCTTATGAAAGGTCAGAGGATCCAATCTATGTGCTAGAGAACAACATACCAATAGACCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGGATTTTTGAGCCTATTTTGAAGAATGCCAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTGTTTCTACGCCATCAAACTGTGGCATAATGAAATTTGCTAAGAAACAGCTTACTTGCATCGGTTGCAAAGCTTTACTTAGCAATGGAGACCGCACTCTATGCTTGCATTGCAAGGGAAGGGAAGCTGAGCTGTACTGCAAAACAGTTGCTCAAGTTTCTGATCTAGAGACGCTTTTTGGTAAGCTTTGGACACAGTGTCAAGAATGCCAAGGTTCCCTTCATCAGGATGTTCTCTGCACAAGGATGTGTTATTGTGGATCTTGCCGCCTGACGGTTCTTGAGACAGGAGTTGAAGGGGAACTTGCCCCCACTTCGCAGGCCCTGTAA 3141 0.4145 MSSSTKPLSLKPKSPSSSVTSSNARLSLLALPNGSVRIYPPSIFHNPLALVSICNFTVSDTRALEIDYVIGESHKELLPNSSGPAAIIRIFGVSKEGHSVCCNVHGFEPYFYISCPPGMRPDDISGFHKILEGRMKESNRNSKVPQFVRRIEMVQRKSIMHYQQQNSQSFLKIVVALPTMVASCRGILDRGIQIDGLGMKSFMTYESNILFALRFMIDCNIVGGNWIEVPAGKYKKTAKNLSYCQLEFDCLYSVLISHAPEGHFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGTDVMSFGTEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPILGRIRNSRVRVKDTTFSSRQLGTRESKEVTIEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQIKFQILMHKLLMWCLPNAVACTTFVSNVTLKEDVHHSIISDLQNGNADTRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNVKRAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCSLVTPEDVRKLNLPPESVNKTPSGEMFVKSNLQKEAKDPLEKAVLDGRQLALKVSANSVYGFTGATVGQLPCIEISSSVTSYEFDDRINLMPCKGRQMIEHTKRLVEDKFTTLNGYENNAEVIYGDTDSVMVQFGVSSVEEAMKLGREAAEYISRTFIKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQHVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISVSTPSNCGIMKFAKKQLTCIGCKALLSNGDRTLCLHCKGREAELYCKTVAQVSDLETLFGKLWTQCQECQGSLHQDVLCTRMCYCGSCRLTVLETGVEGELAPTSQAL 1046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0285 1046 FunFam DNA polymerase 65 240 - -
Lele18g0285 1046 Pfam DNA polymerase family B, exonuclease domain 94 437 IPR006133 -
Lele18g0285 1046 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 63 769 - -
Lele18g0285 1046 Gene3D - 269 517 IPR036397 GO:0003676
Lele18g0285 1046 FunFam DNA polymerase 269 458 - -
Lele18g0285 1046 PRINTS DNA-directed DNA-polymerase family B signature 660 672 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele18g0285 1046 PRINTS DNA-directed DNA-polymerase family B signature 733 741 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele18g0285 1046 PRINTS DNA-directed DNA-polymerase family B signature 590 603 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele18g0285 1046 SUPERFAMILY DNA/RNA polymerases 556 922 IPR043502 -
Lele18g0285 1046 Gene3D - 778 930 IPR042087 -
Lele18g0285 1046 Gene3D Helix hairpin bin 631 674 - -
Lele18g0285 1046 MobiDBLite consensus disorder prediction 1 20 - -
Lele18g0285 1046 Pfam C4-type zinc-finger of DNA polymerase delta 957 1019 IPR025687 -
Lele18g0285 1046 ProSitePatterns DNA polymerase family B signature. 735 743 IPR017964 GO:0000166|GO:0003676
Lele18g0285 1046 SMART polmehr3 268 747 IPR006172 GO:0000166|GO:0003676|GO:0003887
Lele18g0285 1046 Pfam DNA polymerase family B 531 644 IPR006134 GO:0000166|GO:0003677
Lele18g0285 1046 Pfam DNA polymerase family B 768 920 IPR006134 GO:0000166|GO:0003677
Lele18g0285 1046 Gene3D DNA Polymerase, chain B, domain 1 64 241 - -
Lele18g0285 1046 SUPERFAMILY Ribonuclease H-like 85 537 IPR012337 -
Lele18g0285 1046 CDD DNA_polB_delta_exo 265 523 - -
Lele18g0285 1046 FunFam DNA polymerase 775 931 - -
Lele18g0285 1046 Gene3D Palm domain of DNA polymerase 560 777 IPR023211 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0285 Lele-ChrLele18 1687891 1699400 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0285 47 1018 Core DNA Replication Machinery Family AT5G63960 75.024 0.0 1590