LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0267	ATGCCCGCTTGGTGGGGAAGAAAGTCCAGCAAGAACAAGGAGGAGCAGCGGCAACAGCAGCTTCCCCAGCCTGAATCACATGGTGGAATTCAGTTTAATTTCATCAAATCGCCGATCGGGAATGTTGCCAAGAAAGGAAGAGACAAACCCAAGAGCCTTGACGAGGTCTCAACCGCGATGCTCTCTCGGAGTTCACCCAGAACCAGCAGGGATTTTACTCTTACCGGTGCTGCTCCCGTTGGTGGATCGTCCTCGGGATTTTCTTGTTTTGATTCTGATGGGGGCGGCGAGAAGATAGGCCTTCCTTTGCCTCGACCATCGATTTCGTCCCCGCAGAGCTTTGGGAATGATCAAGGAGATGGAGATGGCTTGGGATCTGCGTCGATCTCTGGTTCAAGCGTGAGTTCTTCTGGGTCCTACGATCATCATCCAATCTCTCAATTTGATGGCATCAGGGGACGAGGTGATATGAAGATTAACATGAGGTCAAAAAGCCCTGGTCCTGGGTCCAGAGGGCCCACCAGCCCGACTTCACCCCTCCATCCAAAATTGCATGTTCTAAGTATTGACTCTCCTACAGGCAAACAAGATGATGGAAGGAGTGAGTGTCATCCATTGCCTCTACCACCAGGTTCACCGACTAGCCCTTCTGCTCTCTCCAATGCAAGAACTAATGGTCTTCTAGAAAACACCAACAATCTGTCCAAGTGGAAGAAAGGAAAGCTTTTAGGACGAGGGACATTTGGTCATGTGTACCAGGGATTTAATAGTGAAAGTGGACAAATGTGTGCAATAAAAGAAGTCAGAGTTTTCTCTGATGATCAAACTTCGAAAGAGTGCCTCAAACAACTTAACCAGGAGATGGATCTGCTCAGTTCACTTTCACATCCTAACATTGTTGAATACTATGGGAGTGAGCTGGGAGAAGACACACTTTCTGTTTATTTAGAATACGTCTCTGGTGGTTCCATCCATAAACTACTTCAGGAATATGGTCCATTTAAGGAACCTGTTATTCAGAACTATGTTAGGAAGATTGTCTCTGGACTTGCCTATCTGCATGGAAGAAACACGGTGCACAGGGATATCAAAGGGGCAAACATACTAGTTGATCCTAATGGCGAAATTAAGTTGGCGGACTTTGGAATGGCTAAACATATAAATTCTTCTACCTCCATGCTTTCTTTCAAGGGAAGTCCATATTGGATGGCACCCGAGGTTGTTATGAATACAAATGGTTACAACCTTGCCGTGGATATATGGAGCTTGGGATGCACAATTTTGGAAATGGCAACATCAAAACCTCCATGGAGTCAGTATGAAGGGGTAGCTGCTATATTTAAAATTGGGAACAGCAAAGACATGCCTGAAATCCCGGAGCATCTTTCAAATGATGCCAAGTCTTTCATACAGCTATGCTTACAAAGAGACCCCTCAGCTCGCCCAACTGCTCAAAGGTTGCTAGAGCATCCCTTTATTCGTGATCAATCCGCGACAAGAGCTGCCAATGTCAACTTAACCAGAGATGCTTTTCCCTACATGTTTGATGGAAGCCAGACGCCGCTACATGTAGAGCTTCATTCCAGTAGAACAAATATGACTTCAGTGGATGGAGATTATGCAACAAAGCCATCTTTTGCAGCTTCACGAGCATTAAGGAGCCCAAGAGATAATGCAAGAATGATTACATCTTTACCGGTATCCCCCTGCTCAAGTCCATTGCGGCAACATGGATCAGCATACAAGAGCTGTATGCTTTCTCCTCCACATCCAACTTACAACCCCCCGGTGGGACAAAATACCTACAATTTTAGCGATCTCTCTTCACATCCAGTGAGATCAAACGCCACCTTCACTTTGGATCCTTGGAATGAGAGATCTCTATATAACGCCCACACACCACCTGGTGGGTCCCCAAGAAGAAGACTCATTTGA	1935	0.4605	MPAWWGRKSSKNKEEQRQQQLPQPESHGGIQFNFIKSPIGNVAKKGRDKPKSLDEVSTAMLSRSSPRTSRDFTLTGAAPVGGSSSGFSCFDSDGGGEKIGLPLPRPSISSPQSFGNDQGDGDGLGSASISGSSVSSSGSYDHHPISQFDGIRGRGDMKINMRSKSPGPGSRGPTSPTSPLHPKLHVLSIDSPTGKQDDGRSECHPLPLPPGSPTSPSALSNARTNGLLENTNNLSKWKKGKLLGRGTFGHVYQGFNSESGQMCAIKEVRVFSDDQTSKECLKQLNQEMDLLSSLSHPNIVEYYGSELGEDTLSVYLEYVSGGSIHKLLQEYGPFKEPVIQNYVRKIVSGLAYLHGRNTVHRDIKGANILVDPNGEIKLADFGMAKHINSSTSMLSFKGSPYWMAPEVVMNTNGYNLAVDIWSLGCTILEMATSKPPWSQYEGVAAIFKIGNSKDMPEIPEHLSNDAKSFIQLCLQRDPSARPTAQRLLEHPFIRDQSATRAANVNLTRDAFPYMFDGSQTPLHVELHSSRTNMTSVDGDYATKPSFAASRALRSPRDNARMITSLPVSPCSSPLRQHGSAYKSCMLSPPHPTYNPPVGQNTYNFSDLSSHPVRSNATFTLDPWNERSLYNAHTPPGGSPRRRLI	644

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0267	644	FunFam	Mitogen-activated protein kinase kinase kinase	235	517	-	-
	Lele18g0267	644	SMART	serkin_6	237	493	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele18g0267	644	Pfam	Protein kinase domain	238	493	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele18g0267	644	MobiDBLite	consensus disorder prediction	106	143	-	-
	Lele18g0267	644	MobiDBLite	consensus disorder prediction	57	90	-	-
	Lele18g0267	644	MobiDBLite	consensus disorder prediction	548	573	-	-
	Lele18g0267	644	SUPERFAMILY	Protein kinase-like (PK-like)	234	558	IPR011009	-
	Lele18g0267	644	Gene3D	Transferase(Phosphotransferase) domain 1	234	516	-	-
	Lele18g0267	644	ProSitePatterns	Protein kinases ATP-binding region signature.	243	266	IPR017441	GO:0005524
	Lele18g0267	644	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	72	501	-	-
	Lele18g0267	644	ProSiteProfiles	Protein kinase domain profile.	237	493	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele18g0267	644	CDD	STKc_MEKK1_plant	236	493	-	-
	Lele18g0267	644	MobiDBLite	consensus disorder prediction	1	223	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0267	Lele-ChrLele18	1592030	1596926	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0267	1	556	MAP Kinase Kinase Kinase	AT1G53570	57.268	0.0	555

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Lele18g0267		Pkinase	1.4e-73	CL0016