Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0258 ATGTTGAATAGCAATAACCTACCATAGGGAAGCTATAAGGCTCTGGGAAGTGGAATGAGTGGAAGTAGCAGAAGGCGTTCCTCAAAGTGGGATTTAAGAGATGAACCTGAGTTTGTACCTGACAGTAAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTCACTGGTAGCAATAGTTCAAAATGGTCTTATTTGGATGGGAATGAGAAGCTAAAACCTAATCTGCGATTACCATTCAAGGAGCCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGAAATCATGAATAAAGAATATAATAGAGATTTGGATACCAAAATGGCATGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCGCAGTCATTCCCCCAAAAATGGTTTGGACAGGAGTAGAAGCCGGAGCCGGAGCCCTGCCCATGGTTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGCTGGAGGATTGCCACAACCATGTAGAGATTTTACTGTTGGGAAATGCAGAAGAGGTAGCCGTTGCCATTTTCTTCACCATGACGATCGGAATTATGAGGATGGCTGGGACAGTAGAAACAGGAAAGATGGACCTCCCAGATATTGTGCTCCCTATGAAAGCAGGGATTATTCTGCTAGGAGTGGAAGATCAAATGAGACTTGTATCAATTTTGCACAAGGCAAATGTAGAATGGGAGCATCTTGCAAATACGGGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGATTCATCTAGAGAGAGGGAATTTGATCAAAGGCGCCGGGAGAGTTCTTTCGAGCGTGGTGGTGGGCATGAGCCAAACCGCTTTAGTGATACTCCCTGCAAATTTTATGTTGCCGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCACGATATTCAGGCATCTAGGAGCCCAAATAGAAGATTAAGAGATGACAGGTGGGGGAACAATCCAGGCAGAGATCGGGCATTGGATAGACCAAGAGAGAGTAACTCAGTTAGTCCTAGTAGAAGGCCAAGAGATGATAGATGGGGTCCAGATGGCAACATGGTTGACATGGATAAAATGTGGGATGGTCCAAAACTGCATGATGCTGTTGCTGTCTCGGATACAGCAAAGCTGAGTGAAGATAAGAGTGGAAATATGGGCATACCAGAACCTGGATTTACTACTTGGCCCAGGACTGATGGATGGGGCGATAATTTAGATGACAACGTGTATGCTGAGCCACCATTTGTGGGTGACAAGAAGAAAGCAGAGCAATGGAAGACAGAAAATGCTGGTGCTACCATGGGTGCTCCCCAATCAATTGGGACTGACAAGTGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGAGGGGATCTTCTGGGCATATTGAAGACAAGAGTGTGCAGAATAAGCATGGTTTGACCCAGGGTGGTGCATATTTAGCCACCTCCGAACATCACAGATTACAAGTTGCTCCAGGACAAGGTTTCAATCAGAACTCACAGAATGCAAATGCTTTGCGTCCTTCTAGCTGTAATGTGGTTGGAGAAAGTCAAGGGGCAGTCCCTGTTGTTCCTCCACTTGGAGGGATAGCTGAAGTTATACAGAACCAAGCATCTTCTGCCAAAAAGTATAGTGTTGAGCCAAATATCATGGATGCAACCTTATCGCATGTTAGTACAATAAATACTCCAACGCAACACATGGTGAGCAATGATCAGCTTGCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCATTTCCTGGGAACAGGTCAGCAACTTCCACAAATTTATGCTGCTCTGAATTCTCATGATGTGAAGGACACGTCCTCCCTAGCCAAAACTAAAGTATCTGGGGAGCGTGTTTCCAGTGCATACATCAAGCCAGATCCTGTTATTGGATCCCAGAAGCAGTATGATCCAATGAGTGATAGTATGGAGCCAATGAAGACTGATGCAGGTGGAATCACGCCAGCCTTTTCTCCTAGTAAAACAATTGCTGATAGTTCAGTGAGACAAAATCTTGGTGATTCTCGTAAGGCTTCAGAAGAACAAATTGTCAAGAGTGAACATTTAAACCCTTTGCAGTCAGGTCAAAAAGTTGAAGCTAATAAGGGAAACAATGACGTGGCAGCTGAGGAAAGGCTAGATTCTCAAGCTGATGATAGAAATGCAAAAGATAATGGTCCTTCAGAAAATCTGGACCAAAATGGGTCTGATGAGGCGAAGAAAACGAAGGATGTGAAGGGGATTCGTGCTTTTAAATTTGCGCTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGATGGTCACATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTATGCAGGGGGCTCATATCCCTCAGTCACAAGAAAAAATTGATCACTATTTGTCAGTTTCGAAACCAAAGCTTAACAAGCTTGTACAGGCATATGTCGAAAAGGTTCAGAAGGCTTAG 2556 0.437 MLNSNNLPXGSYKALGSGMSGSSRRRSSKWDLRDEPEFVPDSKQLRSGWSSANVTGSNSSKWSYLDGNEKLKPNLRLPFKEPFSGGRVSNKDEIMNKEYNRDLDTKMAWDADESYGMKMSPGLEEWKRKRRSHSPKNGLDRSRSRSRSPAHGFRWESGVNDRNRMRAGGLPQPCRDFTVGKCRRGSRCHFLHHDDRNYEDGWDSRNRKDGPPRYCAPYESRDYSARSGRSNETCINFAQGKCRMGASCKYGHHSNSDDMSKGNVDDSSREREFDQRRRESSFERGGGHEPNRFSDTPCKFYVAGNCRNGKYCRFSHDIQASRSPNRRLRDDRWGNNPGRDRALDRPRESNSVSPSRRPRDDRWGPDGNMVDMDKMWDGPKLHDAVAVSDTAKLSEDKSGNMGIPEPGFTTWPRTDGWGDNLDDNVYAEPPFVGDKKKAEQWKTENAGATMGAPQSIGTDKWLVDAEMSPDWNYGRGSSGHIEDKSVQNKHGLTQGGAYLATSEHHRLQVAPGQGFNQNSQNANALRPSSCNVVGESQGAVPVVPPLGGIAEVIQNQASSAKKYSVEPNIMDATLSHVSTINTPTQHMVSNDQLAQLSSLSASLVHFLGTGQQLPQIYAALNSHDVKDTSSLAKTKVSGERVSSAYIKPDPVIGSQKQYDPMSDSMEPMKTDAGGITPAFSPSKTIADSSVRQNLGDSRKASEEQIVKSEHLNPLQSGQKVEANKGNNDVAAEERLDSQADDRNAKDNGPSENLDQNGSDEAKKTKDVKGIRAFKFALVEFVKELLKPTWKDGHINKEHYKTIVKKVVDKVTGTMQGAHIPQSQEKIDHYLSVSKPKLNKLVQAYVEKVQKA 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0258 851 MobiDBLite consensus disorder prediction 26 41 - -
Lele18g0258 851 Gene3D - 171 257 - -
Lele18g0258 851 ProSiteProfiles Zinc finger C3H1-type profile. 292 319 IPR000571 GO:0046872
Lele18g0258 851 MobiDBLite consensus disorder prediction 1 62 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 253 294 - -
Lele18g0258 851 Gene3D - 291 362 - -
Lele18g0258 851 Pfam RNA-binding, Nab2-type zinc finger 234 252 - -
Lele18g0258 851 Pfam RNA-binding, Nab2-type zinc finger 297 316 - -
Lele18g0258 851 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 19 850 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 44 62 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 726 748 - -
Lele18g0258 851 ProSiteProfiles Zinc finger C3H1-type profile. 168 195 IPR000571 GO:0046872
Lele18g0258 851 MobiDBLite consensus disorder prediction 681 695 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 1 25 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 323 376 - -
Lele18g0258 851 ProSiteProfiles Zinc finger C3H1-type profile. 228 256 IPR000571 GO:0046872
Lele18g0258 851 MobiDBLite consensus disorder prediction 126 169 - -
Lele18g0258 851 SUPERFAMILY CCCH zinc finger 295 317 IPR036855 GO:0046872
Lele18g0258 851 SMART c3hfinal6 229 254 IPR000571 GO:0046872
Lele18g0258 851 SMART c3hfinal6 292 318 IPR000571 GO:0046872
Lele18g0258 851 SMART c3hfinal6 170 194 IPR000571 GO:0046872
Lele18g0258 851 MobiDBLite consensus disorder prediction 708 723 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 650 762 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 126 150 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 254 290 - -
Lele18g0258 851 MobiDBLite consensus disorder prediction 395 430 - -
Lele18g0258 851 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 173 193 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0258 Lele-ChrLele18 1530509 1535181 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele18g0258 zf-CCCH 0.00025 CL0537