Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0250 ATGTGTGACAGGAGGCTTTGTCTCTGTGGACAAGATATGCTTAACTTCGATGAAGAAGATACAGAAATATTCTTCGACTCAGCAGATTTTCTGCCATCTCAACACTCTGTTCTAGACGAAGACTTGGGAAGTAACAAGCTTGGGTATGAAGTTTGGGTGAACAACCCTCAAAGTGTGAAGGAAAGACGGCAACGTTTTTTCCAGGAAATGGGTTTTGCCGACTCTTCTTCGAACGTTTCCTCTCAAGAGATCAACGCGCTGGAACTTGAAAGGATAATGGAGAGCGAAGGCGCAGTATCAAGTTCCTTCAGTTCCTCTACCGAAGCAAACGTCTCGTTTGATGAACACAACGGAGATGTAAACTTTGAAAGGAAGGCGTGCGAGTCATCTTCTTCAGGTGAAGATCACAGACGACCCAGAGAAGCTGAGGCGTCAGAAGAATGTCAGCATGGTCCCTTCGATACGGGTAAAAAGAAAATGAAGGGATGGTGGAAGCTCTTCGTGAAGAGCAGGAAAAAAATTGGAGGGAAAATGCGATCAAAATTGACTAGAGAGACGAGTAAAACTCGTAGAATAAATGTAAAGCAGAACAAAAAGAGGTGGATGGAATTGAGTGCTTTGTACTTAGGACAAGAGATTAGAGCTCATGCAGGCTTAATCTGGAGTATGAAGTTTAGTCCTAATGGGCAGTATGTAGCAAGCGGTGGTGAAGATGGTGTAGTTCGAGTATGGCGTGTTCTATCGATGGATACATCCAGCATTTGCTTGAATGCAGAAGACGCTACTACTACTAGCAAAGCGAAACAAGATACCTCTTGTTCATGGAGGAAAAAGTTGAATATATCCTTCATGGCCCTTCCAAACAAGGTTCTTCAAATTGAGGAATCGCCACTGCAAGAATTCTTTGGTCATACCAGTGATGTCTTGGATTTGGCTTGGTCTGATTCAAATATTCTTTTGTCGTCTTCAACGGACGAAACAGTCCGTTTGTGGCAAATTGGTTGTTATCAATGTATGGGTGTCTTCCGTCACAATGACTATGTGACTTGCATCCAAGCCAACCCAATTGATAAAAACTACTTCATCAGTGGGTCTATAGATGGCAAAGTCCGAATATGGGGGCTATGTGAAGGACGTGTTGTGGATTGGGCAGATGTAAGAGATGTGATTACGGCTGTAAGTTACCATCCAGATGGGAAGGGGTTTGCAGTTGGATCCATCACAGGCGCTTGTCGTTTTTATGTGGCTTCAGGCAAACATTTCCAGCTTGAGGCAGAGATATGGGTTCATGGGAAGAAGAAATCAGCTGGCAACAAGATTACTGGCATTCAGTTTTCACAGAAAAAGCACCAGAGAGTCATGATCACATCAGAAGATTCTAAAATTCGTGTGCTTGATGACTTTGAACTTGTCCAGAAATTTAGAGGCATTCCGAAGTCAGGAAGCCAGATATGTGGCTCATTTACATCAACCGAAAATCGTATAATTTCTGTTGGAGAGGACTCCAATGTGTACGTTTGGAATTGTAATGACTTGGGAAATTCATCATCCAAACCCATAAAATCCGAGCGTTGCTGTGAGTACTTTTCCACTGAAGGCGTTACTGTGGCAATACCCTGGTTGGTAAATAGCACAGAACAAACGAGCTTATCTGGTAATAATTCACTCCAAGAGGCTCGTCCTAGTGTTAGAGATTCAGAGCGTTTCTCTCTCGGTAATTGGTTCTCCATGGAAGGGACATGCCGGGGTTCGGTGACGTGGCCGGAAGAGAAACTTCCAAGCTGGAATTTACCATTTACAGAAGATGAATATGATCCCGTAGAGCTGTGGCATGAAAGAGGTGGATCAGAAACATGGGGATTATCCTTTGTGGTAGCTGGTTTGGATGGAACTATCAAGACGTTTCATAACTTTGGATTGCCTGTTAGGCTTTAG 1935 0.4351 MCDRRLCLCGQDMLNFDEEDTEIFFDSADFLPSQHSVLDEDLGSNKLGYEVWVNNPQSVKERRQRFFQEMGFADSSSNVSSQEINALELERIMESEGAVSSSFSSSTEANVSFDEHNGDVNFERKACESSSSGEDHRRPREAEASEECQHGPFDTGKKKMKGWWKLFVKSRKKIGGKMRSKLTRETSKTRRINVKQNKKRWMELSALYLGQEIRAHAGLIWSMKFSPNGQYVASGGEDGVVRVWRVLSMDTSSICLNAEDATTTSKAKQDTSCSWRKKLNISFMALPNKVLQIEESPLQEFFGHTSDVLDLAWSDSNILLSSSTDETVRLWQIGCYQCMGVFRHNDYVTCIQANPIDKNYFISGSIDGKVRIWGLCEGRVVDWADVRDVITAVSYHPDGKGFAVGSITGACRFYVASGKHFQLEAEIWVHGKKKSAGNKITGIQFSQKKHQRVMITSEDSKIRVLDDFELVQKFRGIPKSGSQICGSFTSTENRIISVGEDSNVYVWNCNDLGNSSSKPIKSERCCEYFSTEGVTVAIPWLVNSTEQTSLSGNNSLQEARPSVRDSERFSLGNWFSMEGTCRGSVTWPEEKLPSWNLPFTEDEYDPVELWHERGGSETWGLSFVVAGLDGTIKTFHNFGLPVRL 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0250 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 341 375 - -
Lele18g0250 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 301 333 - -
Lele18g0250 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 213 254 IPR001680 GO:0005515
Lele18g0250 644 SUPERFAMILY WD40 repeat-like 208 511 IPR036322 GO:0005515
Lele18g0250 644 SMART WD40_4 467 508 IPR001680 GO:0005515
Lele18g0250 644 SMART WD40_4 420 466 IPR001680 GO:0005515
Lele18g0250 644 SMART WD40_4 335 374 IPR001680 GO:0005515
Lele18g0250 644 SMART WD40_4 377 415 IPR001680 GO:0005515
Lele18g0250 644 SMART WD40_4 294 332 IPR001680 GO:0005515
Lele18g0250 644 SMART WD40_4 206 245 IPR001680 GO:0005515
Lele18g0250 644 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 213 246 - -
Lele18g0250 644 CDD WD40 211 508 - -
Lele18g0250 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 301 333 IPR001680 GO:0005515
Lele18g0250 644 MobiDBLite consensus disorder prediction 125 154 - -
Lele18g0250 644 Gene3D - 105 384 IPR015943 GO:0005515
Lele18g0250 644 Pfam WD domain, G-beta repeat 337 373 IPR001680 GO:0005515
Lele18g0250 644 Pfam WD domain, G-beta repeat 212 244 IPR001680 GO:0005515
Lele18g0250 644 Pfam WD domain, G-beta repeat 296 331 IPR001680 GO:0005515
Lele18g0250 644 ProSiteProfiles Trp-Asp (WD) repeats profile. 341 375 IPR001680 GO:0005515
Lele18g0250 644 PANTHER WD REPEAT DOMAIN 44 122 641 IPR040324 -
Lele18g0250 644 Gene3D - 385 571 IPR015943 GO:0005515
Lele18g0250 644 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Lele18g0250 644 PRINTS G protein beta WD-40 repeat signature 232 246 IPR020472 -
Lele18g0250 644 PRINTS G protein beta WD-40 repeat signature 319 333 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0250 Lele-ChrLele18 1493838 1496358 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0250 298 406 U-box Gene Family AT2G33340 32.773 3.56e-08 54.3