Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0249 ATGTCATCTCACCCCCGTCTTCCTCCTCCTCCTCAACTCTGCTTTCGGTGGCCATTATACCCTTATTTTCTTGCCTCTTCCCATATAATCCCCATTGGAAGGAAGGAACAAGTGCTGTTGCCCGTCACCATGGGGAGAGATGACCTGTGCGTTACAATTCCTAGCTTCTTCAGGTGCCCAATTTCCCTCGACGTCATGAAATCCCCCGTCAGCCTCTGCACCGGAGTAACATACGATCGTTCCAGTATCCAACGCTGGCTCGACGACGGCAACAACACCTGCCCCGCCACCATGCAGGTACTCCAATCCAAGGAATTCGTCCCTAACCTTACGCTCCAGAGGCTTATCCAAATCTGGACTGACTCCGTTCGACACCGAATGGAATCTGCCGATTCCCCGGCTGCCAAATCGGTCCCGTCCCAGGACCAAGTCGTCGCCGCTACCCAAGATTTGGAGGGTAAGAGCGAGAACCCTTTGCGCTCCCTCTCCGTAATTCTATCTTTCGCCGGAGCATCCGAAGAGAACCGGGAATTCCTAGCCAACATAGATGGATTAGTACCTTTGCTCGTTGGTTTCCTCGACAATGTCGACGGTGGGATTACTCGGAGCGTCGAATTTCTTGAGGAAGTTGTCAAGGCTTTGGAGTTGGTCCTGAATAAAGCAAAAGATGACGAGACATTGAAGCATACGATTGTGAAGAGCAAGGGAGGCAATTGTTTAGCTTCTCTACTTCTAGTTCTGCAACGAGGCAGCTCTGATTCGAAAATTGTGTCGGCTAAGATTTTGAAATTTGCCGCTGCGGACGTTGAATCGAAAATCTTGATCGCTGAAAAGGAAGGCCTAATTCATGAATTGCTTAAAATGACGACATCATACAAAGATGCGACGCTAATCGAGAACGGCTTATCCTGCTTGGTGGCAATCTCAACGCCGAAACGAAACAAGGCGAAATTGATCCATCTCGGAGCTGTGAAGAAATTATCGGAATTGCTTTCGGAGTCAAAGTGGAGCGTTTCCATCACCGAGAATGTGCTGAGGCTGCTAGAAACGGTGTCGACGACCAAGGAAGGAAGGTTACAGATTTGCGAGGACCCAAATTGCGTGGCGTCGATATTGCAGAAGGTCCTGAAGGTATCAAATGTCACAACGGAGCACGCAGTGACTATACTTTGGAGCGTGTGTTATGTATTTCGTGATCAGAAGGCGCAGGAAGCGGTGACGAAGGCGAACGGTTTGACCAAGGTTCTGCTCCTGATGCAGAGCAATTGTTCGCCGGGAGTTCGTCAAATGTGCGCCGATTTGCTCAAGAATTTCCGGGTTAACTCCAAATCATGCCTCTCCTGCTACCATACCAAGACCACCCACATCATGCCCTTTTGA 1380 0.4978 MSSHPRLPPPPQLCFRWPLYPYFLASSHIIPIGRKEQVLLPVTMGRDDLCVTIPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQVLQSKEFVPNLTLQRLIQIWTDSVRHRMESADSPAAKSVPSQDQVVAATQDLEGKSENPLRSLSVILSFAGASEENREFLANIDGLVPLLVGFLDNVDGGITRSVEFLEEVVKALELVLNKAKDDETLKHTIVKSKGGNCLASLLLVLQRGSSDSKIVSAKILKFAAADVESKILIAEKEGLIHELLKMTTSYKDATLIENGLSCLVAISTPKRNKAKLIHLGAVKKLSELLSESKWSVSITENVLRLLETVSTTKEGRLQICEDPNCVASILQKVLKVSNVTTEHAVTILWSVCYVFRDQKAQEAVTKANGLTKVLLLMQSNCSPGVRQMCADLLKNFRVNSKSCLSCYHTKTTHIMPF 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0249 459 CDD RING-Ubox_PUB 57 99 IPR045210 -
Lele18g0249 459 Pfam U-box domain 53 121 IPR003613 GO:0004842|GO:0016567
Lele18g0249 459 SUPERFAMILY RING/U-box 47 122 - -
Lele18g0249 459 SMART Ubox_2 56 119 IPR003613 GO:0004842|GO:0016567
Lele18g0249 459 ProSiteProfiles U-box domain profile. 52 126 IPR003613 GO:0004842|GO:0016567
Lele18g0249 459 Gene3D - 127 454 IPR011989 -
Lele18g0249 459 FunFam RING-type E3 ubiquitin transferase 45 125 - -
Lele18g0249 459 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 52 126 IPR013083 -
Lele18g0249 459 PANTHER WDSAM1 PROTEIN 52 447 IPR045185 GO:0061630
Lele18g0249 459 SUPERFAMILY ARM repeat 209 445 IPR016024 -
Lele18g0249 459 Coils Coil 204 224 - -
Lele18g0249 459 SMART arm_5 311 353 IPR000225 GO:0005515
Lele18g0249 459 SMART arm_5 268 310 IPR000225 GO:0005515
Lele18g0249 459 SMART arm_5 399 440 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0249 Lele-ChrLele18 1483888 1485860 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0249 44 459 U-box Gene Family AT5G64660 52.582 3.23e-142 412