Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0244 ATGTTTGCCTCTTCTTCTTCCTCTGGCTCGCTGCTTCTCCAGGATCTTCTTGGGGATTTCCATTCCAGAAGGTTGCTCCTCCTACACAACCCACTTAACTCACAGGCCACCCCTCCGGCGGCTCCCTTAACCACCCCCAATTTGACAGACAAGTACCTTGGGAATGGCAATTTTGACGCGAACGTTGTCATGGTGCTCTCGGTGTTATTGTGTGCTCTTATATGCTCTCTCGGCTTGAACTCCATCATAAGGTGTGCCCTGAGGTGTTCAAATCTGGTGGTCAACATCGAGCCCGCCGGGACAAGCGCTCCGGCTCCATTGGCCAACACCGGAGTCAAGAAGAAAGCTCTCAAGACTTTCCCCACCGTAAACTACTCCGCCGAGCTCAAGCTTCCAGGTTTGGACACAGAGTGCGTTATATGCTTGTCAGATTTTACCAATGGCGAACGGGTCAGGATTTTGCCGAAGTGCAACCATGGCTTCCATGTGAAATGCATTGACAAGTGGCTCAGCTCGCACTCGTCTTGTCCTAAGTGCAGACAGTGCCTAATTCAAACTTGCCAGAAGATTGTTGGATGCACTACGACTCAGGCTAGCTCGTCCCAACCACCTGAAACCATTATCAGGATTGCGCCTCTCGAACCAGAAGGTCTGGTCCGTGACTACAGGGGATCGGAAGCACTTAATTACAATTACAGGAGGGGAATGGGAGGTTGTGAATATGCTATTGTTGTGTTGTGGAGAAGCAACAAAACTAAAATAATAAATTGGTTAGCACTGGAGTCCGATTTTTCAACAATGGCCCGAACCAAGCAAACTGCCCGCAAGTCTACTGGTGGTAAGGCCCCTCGCAAGCAGCTAGCAACCAAAGCTGCTCGGAAATCGGCTCCCGCCACCGGTGGCGTCAAGAAACCTCACCGATTCAGGCCCGGAACCGTAGCTTTGAGGGAGATTAGGAAGTACCAGAAGAGCACGGAGCTCCTGATCCGTAAGCTCCCATTCCAGCGTTTGGTTCGAGAAATTGCTCAGGACTTCAAGACTGATCTCAGGTTCCAGAGCAGTGCAGTGGCTGCGCTACAGGAGGCTGCTGAGGCCTACCTCGTCGGGTTGTTTGAAGACACCAATTTGGTATTGACCCCTCCCTGGGATAAGATTTGA 1158 0.513 MFASSSSSGSLLLQDLLGDFHSRRLLLLHNPLNSQATPPAAPLTTPNLTDKYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNLVVNIEPAGTSAPAPLANTGVKKKALKTFPTVNYSAELKLPGLDTECVICLSDFTNGERVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGCTTTQASSSQPPETIIRIAPLEPEGLVRDYRGSEALNYNYRRGMGGCEYAIVVLWRSNKTKIINWLALESDFSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLVLTPPWDKI 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0244 385 SMART h35 300 385 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 Pfam Ring finger domain 137 180 IPR001841 -
Lele18g0244 385 MobiDBLite consensus disorder prediction 273 306 - -
Lele18g0244 385 PRINTS Histone H3 signature 324 341 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 PRINTS Histone H3 signature 300 321 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 PRINTS Histone H3 signature 346 364 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 PRINTS Histone H3 signature 364 380 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 PRINTS Histone H3 signature 269 283 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 PRINTS Histone H3 signature 283 297 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 ProSiteProfiles Zinc finger RING-type profile. 138 180 IPR001841 -
Lele18g0244 385 SMART ring_2 138 179 IPR001841 -
Lele18g0244 385 ProSitePatterns Histone H3 signature 2. 333 341 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 Pfam Core histone H2A/H2B/H3/H4 267 377 IPR007125 GO:0003677
Lele18g0244 385 ProSitePatterns Histone H3 signature 1. 281 287 IPR000164 GO:0000786|GO:0003677|GO:0030527
Lele18g0244 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 184 IPR013083 -
Lele18g0244 385 PANTHER RING-H2 FINGER PROTEIN ATL78 15 218 IPR044602 GO:0016567|GO:0016740
Lele18g0244 385 CDD RING-H2_PA-TM-RING 137 180 - -
Lele18g0244 385 FunFam RING-H2 finger protein ATL73 100 185 - -
Lele18g0244 385 FunFam Histone H3 268 380 - -
Lele18g0244 385 Gene3D Histone, subunit A 268 379 IPR009072 GO:0046982
Lele18g0244 385 SUPERFAMILY RING/U-box 117 185 - -
Lele18g0244 385 SUPERFAMILY Histone-fold 268 376 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0244 Lele-ChrLele18 1447973 1452608 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0244 32 184 C3H Transcription Factor Family AT3G10910 47.826 6.75e-40 138