Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0243 ATGCTGGAACACTCAACTTCATCGGAAAATGCCGCAGCTCCCGTCCAGAGCCTCCCCACAGAGGACGGAGGTGGTAGTGGGCCTGACTCCGATGGCCTCAAAGAGCAGCGGGGGCTCGCAGACCAGGAAGTTGACCGGAATTCCGCCGGTCAGCGGTGGCCTCGAGAAGAGACATCGGCTTTGCTCAAAATAAGGTCTGAGATGGACATTGCTTTCAGGGATATAAGCCCCAAAGGTCCTCTTTGGCAACAGGTTTCGAGGAGATTGGCGGAGCTAGGATACCATAGAAGTGCGAATAAATGTAAGGAGAAGTTTCAAAACATTCACAAGTACCACAGAAGGACCAAGGAAGGCCGTTATGGCGGACCCAGCCGCAAGACCTATCGTTTCTTTGAGCAGCTTGAAGCTCTCCTTCCACCTCCAACTTCAATGGAAAAGGATACCCCACAGTATGTTGTTCAACATGCCGTGCCCTGCTCTATTCGATATCCTAGTGCAAATAGTAATTCCATCACTTCTTCTGCGAATGAAGAATCTGGGGAAGCTGCCCCCAGAAAGAAGAGTAAGCTAATTGAGTTTTTCCAGGACTTGATGAAGGAAGTAATAGAGAAGCAAGAGACTCTACAAAAGAATTTTATGGAGCTGTTGGAAAAATGTGAGCAAGATCGAATAGCTAGAGAGGAAGCATGGAGGACGCAGGAATTCGATCGGCTTAACAGGGAGCGTGAGCTTTTTGCTCGAGAAAGATCTGCTGCTGCAGCCAAGGATGCTGCCTTGCTTGCCTTTCTGAAGAAGATGACAGAACAATCAGCATGCCCGGTGCAGCTGCCGGAGAATATTATTCCGGTTGATCGGAACCTGATTCCAGACAATATAGATAAGAACAAACAAGAAAAAGTCAATGGAGGTTGTGCTGTTAGCGTTACAGCTAAGCAAGAATGTGGGAATGTTGGGAATTTCATACAGATGAGCTCCTCCCGTTGGCCTAAAGAAGAAGTGGAAGCTCTGATCAGATTGAGGACAGACATGGAGGTGGAATGTGAAGGAAATAATGGGCCTAATAAGGGACCCCTATGGGAAGAAATATCTTCGGCAATGAAAAAGCTCGGGTACGATCGCAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATTAAGCAGAAAAACAAGAGAAAGCCTGAGGATTCAAAGACATGCCCCTATTTTCACCAGCTAGAAGAACTATATAGCAAGAAACCAAGGAAGGTCCAAGAATCAGCTGCTGCTTCTGAGAACGAGTTGAAGGCGGAGGAGCTGTTAATGCATATTATTAGCGGTCAAGAAGAGCGACAATCATCTGAAGATGCCGACAGGGAGAAGACTGACCAGATTGAAGGAGATAAGGAAGATTTGGATCAGATGGTAGACAATAATACTTCAACGGCAATCATGGGTTGA 1458 0.4678 MLEHSTSSENAAAPVQSLPTEDGGGSGPDSDGLKEQRGLADQEVDRNSAGQRWPREETSALLKIRSEMDIAFRDISPKGPLWQQVSRRLAELGYHRSANKCKEKFQNIHKYHRRTKEGRYGGPSRKTYRFFEQLEALLPPPTSMEKDTPQYVVQHAVPCSIRYPSANSNSITSSANEESGEAAPRKKSKLIEFFQDLMKEVIEKQETLQKNFMELLEKCEQDRIAREEAWRTQEFDRLNRERELFARERSAAAAKDAALLAFLKKMTEQSACPVQLPENIIPVDRNLIPDNIDKNKQEKVNGGCAVSVTAKQECGNVGNFIQMSSSRWPKEEVEALIRLRTDMEVECEGNNGPNKGPLWEEISSAMKKLGYDRSAKRCKEKWENINKYFKRIKQKNKRKPEDSKTCPYFHQLEELYSKKPRKVQESAAASENELKAEELLMHIISGQEERQSSEDADREKTDQIEGDKEDLDQMVDNNTSTAIMG 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0243 485 Pfam Myb/SANT-like DNA-binding domain 51 137 IPR044822 -
Lele18g0243 485 Pfam Myb/SANT-like DNA-binding domain 326 415 IPR044822 -
Lele18g0243 485 ProSiteProfiles Myb-like domain profile. 326 386 IPR001005 -
Lele18g0243 485 SUPERFAMILY Homeodomain-like 325 402 IPR009057 -
Lele18g0243 485 ProSiteProfiles Myb-like domain profile. 45 109 IPR001005 -
Lele18g0243 485 MobiDBLite consensus disorder prediction 1 57 - -
Lele18g0243 485 MobiDBLite consensus disorder prediction 1 15 - -
Lele18g0243 485 CDD GT1 326 393 - -
Lele18g0243 485 CDD GT1 52 116 - -
Lele18g0243 485 FunFam Trihelix transcription factor GT-2 328 391 - -
Lele18g0243 485 SMART sant 49 111 IPR001005 -
Lele18g0243 485 SMART sant 324 388 IPR001005 -
Lele18g0243 485 Gene3D - 53 114 - -
Lele18g0243 485 Gene3D - 328 391 - -
Lele18g0243 485 MobiDBLite consensus disorder prediction 421 485 - -
Lele18g0243 485 MobiDBLite consensus disorder prediction 34 57 - -
Lele18g0243 485 FunFam Trihelix transcription factor GT-2 53 114 - -
Lele18g0243 485 MobiDBLite consensus disorder prediction 421 474 - -
Lele18g0243 485 PANTHER FI21293P1 22 466 - -
Lele18g0243 485 Coils Coil 191 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0243 Lele-ChrLele18 1443848 1445607 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0243 323 418 Trihelix Transcription Factor Family AT1G76880 45.833 9.44e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele18g0243 Myb_DNA-bind_4 2.4e-21 CL0123