LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0238	ATGGATTTGGACGATTTCCGATCCATATTGGAGACTGCGGGCGTTGACGTGTGGACTTTTATCGACACCGCAATCACCGTCGCTTCCTTGGATTACGGCAATGACTTGAAGCATCGCAGGGATGGAATCGTCGAGCGCCTCTACGCGGCTACTTCCGATCCTGCGTCCTGTCGGAATTGCGAAACCAATCATCTCCGGTCTAACGGCTGCGGAATAGGCTCTCCAATCAAGAAGCAAAGCAGTCCTCTTCCCGACAAAAGTCGTGCCTCGCCTGCAACGCCGCAATCCCTGGTTAAAGATGACAACGAAGACGACGAGGAGAAAGATCCTTACGGAGGTTTGTTCGATGATGAGCCGAAGAAGATTCTGGAGATTAAAGAGCTACTTGAAGACCCTAACCAGTCTGAAGAATCATTGGTGGACTTGCTACAAAATCTTGCAGACATGGATATCACATTCCAAGCGCTAAAGGAAACTGACATTGGGAGGCACGTGAATCGTTTGCGAAAGCACTCGTCCAATGATGTTCGGAGATTGGTGAAGCTCCTTGTCAGGAAATGGAAAGATATTGTCGATGAATGGGTGAAGCTGAATCCACCAGCAGAGCATGCCTCGCTTATGGCAGATGGAGACTCGCCTCAGCCCAAAACCACCCCCCAAAACGGCTATCATCAGATTCCTGATTTTGCTTACTCGCCAAATCCACATAATGGGAGTTCTGGGTCTGACCGGAACAATTCAGAGGCAGAACTAAAACCAAAACCAATTCCTCGGAAAGAAGCCCCACCTAAACCGGCGCCATCTGTCTCTATATCTGCTTCTGCTCCGCCTCAAAACAGGCAGAGAGAACAGAGGGAAAGCAATTTTGACGCGGAGAGACTTGCTTCGGCAAGAAGGCGGCTTCAAGAGAACTACAAGGAAGCGGAAAATGGTGGAATTACCGTTTTAATATTTCACTTTTTCTTCATCTTGCTAGCTCAAACCATACAGGTGATGGACATCCATGACCTACCAAAACCAAAAGCCAAGAATGCCTTCTTTGCGAAGAACAAAGGCGGCGGCGGTTCCCAGGGAAGGCACTGGTGA	1086	0.4908	MDLDDFRSILETAGVDVWTFIDTAITVASLDYGNDLKHRRDGIVERLYAATSDPASCRNCETNHLRSNGCGIGSPIKKQSSPLPDKSRASPATPQSLVKDDNEDDEEKDPYGGLFDDEPKKILEIKELLEDPNQSEESLVDLLQNLADMDITFQALKETDIGRHVNRLRKHSSNDVRRLVKLLVRKWKDIVDEWVKLNPPAEHASLMADGDSPQPKTTPQNGYHQIPDFAYSPNPHNGSSGSDRNNSEAELKPKPIPRKEAPPKPAPSVSISASAPPQNRQREQRESNFDAERLASARRRLQENYKEAENGGITVLIFHFFFILLAQTIQVMDIHDLPKPKAKNAFFAKNKGGGGSQGRHW	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0238	361	SUPERFAMILY	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	120	201	IPR035441	-
	Lele18g0238	361	ProSiteProfiles	TFIIS N-terminal domain profile.	120	194	IPR017923	-
	Lele18g0238	361	Coils	Coil	291	311	-	-
	Lele18g0238	361	MobiDBLite	consensus disorder prediction	211	246	-	-
	Lele18g0238	361	PANTHER	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED	1	361	IPR044790	-
	Lele18g0238	361	MobiDBLite	consensus disorder prediction	203	291	-	-
	Lele18g0238	361	CDD	TFIIS_I	120	192	-	-
	Lele18g0238	361	Gene3D	Conserved domain common to transcription factors TFIIS, elongin A, CRSP70	116	204	IPR035441	-
	Lele18g0238	361	MobiDBLite	consensus disorder prediction	68	97	-	-
	Lele18g0238	361	Pfam	TFIIS helical bundle-like domain	142	191	IPR017923	-
	Lele18g0238	361	SMART	TFS2_5	122	193	IPR003617	GO:0005634
	Lele18g0238	361	MobiDBLite	consensus disorder prediction	68	116	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0238	Lele-ChrLele18	1411810	1413856	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	IWS1	Lele18g0238		Med26	2.5e-12	No_clan