Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0229 ATGGACTTTGACGAATACGATTATTTGGAGAAGACAGTGGAGGAGCAGGAAGATCGAGATTCGAAGAAGAAGAAGGAGAGAAGCGAGAAGGTTGAAAGGAGTTACAGGAAGCGCGAGGTGGACGAGAATCTGGACGGTGAAGAAAAGAAAAGCAAGAAGACCAGAGGAGACGAGCAGAATGGGTCAAAGAAGGATCGTGATGACCGCGAGAGAGAACGGTCTAGCGGCGAAAAGGAGCGCCATAGGAGTGGCAAGGAGAGGGACGGGGAGAGAGAGCGAGAGAGGACTAATAGAGAGAAGGATAGGGAGAAGGAGAGAGACAAAGAGAGGGATAGAGAAAGAAGGGATAAAGAGAGGGAGAGAAGAGAGAGGGACAAAGAGAGCGAAAGAGAACAGGAGAGGGAGGAGAGAGAGAGGTCCAGGAGAAGCAGAAGTCGTTCTGATAGAGATAGAGAGAGAGAACGAGAACTGGAAATCAGAGATAGCCGGAGATTCAGAGACAAGAAAGAGGCTGTGGAGCCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTGTTTGCATACCAGATGCCCTTAAAGGCCACTGAGAGAGATGTTTATGAATTTTTCTCGAAAGCTGGGAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAATTCAAGACGGTCTAAAGGAGTTGGGTATGTTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCTCTCTCTGGTCAATTGCTTCTTGGACAACCCGTAATGGTCAAACCTTCTGAAGCTGAAAAGAACCTTGTTCAGTCTAATGCTTCCACTGGAGCTGCAGGTGTAGCTGGACCATATGGAGCAGTAGACAGGAAACTTTATGTGGGAAACCTTCATTTCAACATGACAGAGAGTCAGCTGAGGGAAATTTTTGAGCCGTTTGGTCCAGTGGAGATTGTGCAGCTGCCTACTGACCTGGAGACAGGACATTGCAAGGGTTTTGGCTTTATTCAATTTTCCCAACTTGAACATGCTAAAGCAGCTCAGAGTTTAAATGGAAAACTGGAGATTGCTGGTAGGACTATCAAGGTTTCATGTGTGACAGATCACATGGGGAGCCAAGATACAACTACAAAATCTGCAGACTTTGATGATGATGAAGGTGGATTGGCCTTAAATGCTCAGTCTAGAGCATTGCTTATGCAGAAGCTGGATCGATCTGGCATTGCCACAAGCTTTGCAGGGTCCGTTGGTATGCCCATTGTAAATGGGTCTGTTCCTGCTCAACAGTCTGTTAGTTTGCCTAGTGCTCCAGGTCTAATGCCCACACCAGCTTCCCAAGCACAAATCATGCCTTCCCCTGTGTTAGAACCTGTAGGAAGCCCTAGCGAGTGTCTACTGTTGAAGAATATGTTTGATCCGACCACTGAGACAGAACCAGATTTTGATATTGACATTAAGGAGGATGTAGAAGAGGAATGTTCTAGATTTGGCCGGGTGAAGCATATTTATGTAGACAAAAGAAGTGCAGGATTTGTGTATTTGCGGTTTGAATCAGTGGAAGCAGCAAGTGCTGCTCAACGATCTATGCACTTGAGATGGTTTGCACGCAGGACGATTTCAGCTATTTTCATGGAACCCCAGCTATATGAAGCCAAGTTTAAAGCGGAAGCTTGA 1659 0.4641 MDFDEYDYLEKTVEEQEDRDSKKKKERSEKVERSYRKREVDENLDGEEKKSKKTRGDEQNGSKKDRDDRERERSSGEKERHRSGKERDGERERERTNREKDREKERDKERDRERRDKERERRERDKESEREQEREERERSRRSRSRSDRDRERERELEIRDSRRFRDKKEAVEPEADPERDQRTVFAYQMPLKATERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYVEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNASTGAAGVAGPYGAVDRKLYVGNLHFNMTESQLREIFEPFGPVEIVQLPTDLETGHCKGFGFIQFSQLEHAKAAQSLNGKLEIAGRTIKVSCVTDHMGSQDTTTKSADFDDDEGGLALNAQSRALLMQKLDRSGIATSFAGSVGMPIVNGSVPAQQSVSLPSAPGLMPTPASQAQIMPSPVLEPVGSPSECLLLKNMFDPTTETEPDFDIDIKEDVEEECSRFGRVKHIYVDKRSAGFVYLRFESVEAASAAQRSMHLRWFARRTISAIFMEPQLYEAKFKAEA 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0229 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 363 IPR000504 GO:0003723
Lele18g0229 552 Coils Coil 86 106 - -
Lele18g0229 552 MobiDBLite consensus disorder prediction 1 156 - -
Lele18g0229 552 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 378 476 IPR029123 -
Lele18g0229 552 TIGRFAM SF-CC1: splicing factor, CC1-like family 68 549 IPR006509 GO:0003723|GO:0005634|GO:0006397
Lele18g0229 552 MobiDBLite consensus disorder prediction 12 156 - -
Lele18g0229 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 190 252 IPR000504 GO:0003723
Lele18g0229 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 357 IPR000504 GO:0003723
Lele18g0229 552 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 481 534 IPR000504 GO:0003723
Lele18g0229 552 CDD RRM2_RBM23_RBM39 287 359 - -
Lele18g0229 552 Coils Coil 110 143 - -
Lele18g0229 552 FunFam Splicing factor CC1-like 97 268 - -
Lele18g0229 552 Gene3D - 454 552 IPR012677 -
Lele18g0229 552 CDD RRM3_RBM39_like 457 539 - -
Lele18g0229 552 Gene3D - 112 270 IPR012677 -
Lele18g0229 552 SUPERFAMILY RNA-binding domain, RBD 285 540 IPR035979 GO:0003676
Lele18g0229 552 Gene3D - 281 377 IPR012677 -
Lele18g0229 552 SUPERFAMILY RNA-binding domain, RBD 176 264 IPR035979 GO:0003676
Lele18g0229 552 SMART rrm1_1 286 359 IPR000504 GO:0003723
Lele18g0229 552 SMART rrm1_1 459 537 IPR000504 GO:0003723
Lele18g0229 552 SMART rrm1_1 184 256 IPR000504 GO:0003723
Lele18g0229 552 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 549 - -
Lele18g0229 552 FunFam Splicing factor CC1-like 269 374 - -
Lele18g0229 552 CDD RRM1_RBM39_like 184 256 - -
Lele18g0229 552 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0229 Lele-ChrLele18 1354601 1360551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0229 265 358 Eukaryotic Initiation Factors Gene Family AT4G34110 35.789 4.61e-08 53.9