LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0134	ATGGAGAACGTTGGAGGAGGTTCGTCTTCGAATAACGACAACAGCGGAATAAAGGAGCAAGACAGGTTGTTGCCGATAGCGAATGTTGGTCGGATCATGAAGCAGATGCTGCCTCAGAACGCTAAGATATCCAAGGAGGCGAAGGAGACCATGCAGGAATGCGTGTCGGAGTTCATAAGCTTCGTGACCAGCGAGGCGTCGGAGAAGTGCCGGAAGGAGAGAAGGAAGACGGTGAATGGGGATGACTTATGCTGGGCCTTGGCCACGCTTGGTTTTGAAGACTATGCCGAGCCACTGAGGAGATATCTCCACAGATTTAGAGAGTTGGAGGTTGACAGAGCTAATCATGACAGAGGAAATAGCCCTCACGACAGGGACGACCTCTATCAAATTCCCTCCTCAGGAATCAGGCACTGA	417	0.5132	MENVGGGSSSNNDNSGIKEQDRLLPIANVGRIMKQMLPQNAKISKEAKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDLCWALATLGFEDYAEPLRRYLHRFRELEVDRANHDRGNSPHDRDDLYQIPSSGIRH	138

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0134	138	FunFam	Nuclear transcription factor Y subunit B-3	12	133	-	-
	Lele18g0134	138	PANTHER	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	10	114	IPR027113	GO:0001228\|GO:0006355\|GO:0016602
	Lele18g0134	138	SUPERFAMILY	Histone-fold	20	124	IPR009072	GO:0046982
	Lele18g0134	138	ProSitePatterns	NF-YB/HAP3 subunit signature.	54	70	IPR003956	GO:0005634\|GO:0006355\|GO:0043565
	Lele18g0134	138	Pfam	Histone-like transcription factor (CBF/NF-Y) and archaeal histone	23	87	IPR003958	-
	Lele18g0134	138	MobiDBLite	consensus disorder prediction	115	138	-	-
	Lele18g0134	138	PRINTS	CCAAT-binding transcription factor subunit A signature	70	88	-	-
	Lele18g0134	138	PRINTS	CCAAT-binding transcription factor subunit A signature	89	107	-	-
	Lele18g0134	138	PRINTS	CCAAT-binding transcription factor subunit A signature	51	69	-	-
	Lele18g0134	138	Gene3D	Histone, subunit A	10	131	IPR009072	GO:0046982

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0134	Lele-ChrLele18	834436	834852	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0134	17	127	CCAAT-HAP3 Transcription Factor Family	AT2G47810	71.171	1.53e-57	174

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	NF-YB	Lele18g0134		CBFD_NFYB_HMF	9.9e-28	CL0012

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