Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0089 ATGATACGTACAGCGATCGCCACTCTCAACGACAGAAACGGCTCCAGCAAGGAAGACATCCTCAAGTTCATAGAGCAAACCTATCCGCAACTTCCTTCAACCCGCCACGCCTTGCTGACTCAGCATTTGAATCTCTTGAAAAGCAGCGGTCTTCTTGTTATGGTCAAGAAATCTTACAGGCTCCCTAAATTTGATGCTTCCCCTCCTACCGCTCAAAGAAAACGGGGTCGACCCCCAAAGCACAAGCCCAACGCCGACACACAGCCCCAGCCGCAGCCTAAAGTTCGGCAAAATGCCAACCCTGTGTGCTTTGCCCTTGGTCTTGAAGATGAGCCCACCAAAACTCTGGCGACGAGAAGGGGCCCCGGCCGTCCCCCGAAAGCTACGATGAACATAGTGGACCAACCTGGGCCGTCAGCTCGTAGGGGACGACCACCCGGGTCGAAAAGACCCAAGCGCTCTCCCGAGCCCAAACCTGAGTCGGAATTTTCGGATGGCACCAAGAGGCGTCCTGGTCGCCCTCCCAAAAATCAAACCAACATAACGGCCATCCCTTTTGCCCTTCCCTATCCCGATGTGCCCGCCAACATAACTGCCATAACTAGCTCAGGTCCAGCGGTACCGCCAGATACTAGCTTACCCAGTATATCTTCAAGAGGTAGGGGGAGACCGAAGAAGAATGCAGCTGCAGTGCCACCATCGGGAGCTGCACCACGAGCTGTTGGAGCTCCAGAGGTAAGGAGACCCAAAGATCCCGCCAGAAGATCTGTCGGCCGGCCAAAGAAGGGGACATCTGTTGAGGACGAGTTGAGGAGCAAACTTGAATATTTTCAATTAAAAGTCAATGAATCTCTTCGTGTGATCAAGCCCCATTTTAACATTTCAAGTCCAGTCAGTGCAATTGCAGCAATTCAAGAATTAGAAAGACTAGCAACAATGGACCTTAATGCATCTGGTTCAAGATAG 966 0.5207 MIRTAIATLNDRNGSSKEDILKFIEQTYPQLPSTRHALLTQHLNLLKSSGLLVMVKKSYRLPKFDASPPTAQRKRGRPPKHKPNADTQPQPQPKVRQNANPVCFALGLEDEPTKTLATRRGPGRPPKATMNIVDQPGPSARRGRPPGSKRPKRSPEPKPESEFSDGTKRRPGRPPKNQTNITAIPFALPYPDVPANITAITSSGPAVPPDTSLPSISSRGRGRPKKNAAAVPPSGAAPRAVGAPEVRRPKDPARRSVGRPKKGTSVEDELRSKLEYFQLKVNESLRVIKPHFNISSPVSAIAAIQELERLATMDLNASGSR 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0089 321 Pfam linker histone H1 and H5 family 1 56 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele18g0089 321 SMART h15plus2 1 58 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele18g0089 321 MobiDBLite consensus disorder prediction 244 268 - -
Lele18g0089 321 PRINTS AT-hook-like domain signature 216 226 IPR017956 GO:0003677
Lele18g0089 321 PRINTS AT-hook-like domain signature 72 82 IPR017956 GO:0003677
Lele18g0089 321 PRINTS AT-hook-like domain signature 137 148 IPR017956 GO:0003677
Lele18g0089 321 SUPERFAMILY "Winged helix" DNA-binding domain 1 73 IPR036390 -
Lele18g0089 321 MobiDBLite consensus disorder prediction 201 218 - -
Lele18g0089 321 PANTHER HISTONE H1 1 178 - -
Lele18g0089 321 Gene3D - 1 84 IPR036388 -
Lele18g0089 321 MobiDBLite consensus disorder prediction 201 268 - -
Lele18g0089 321 CDD H15 1 74 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele18g0089 321 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 1 63 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lele18g0089 321 MobiDBLite consensus disorder prediction 63 180 - -
Lele18g0089 321 SMART AT_hook_2 72 84 IPR017956 GO:0003677
Lele18g0089 321 SMART AT_hook_2 168 180 IPR017956 GO:0003677
Lele18g0089 321 SMART AT_hook_2 218 230 IPR017956 GO:0003677
Lele18g0089 321 SMART AT_hook_2 119 131 IPR017956 GO:0003677
Lele18g0089 321 MobiDBLite consensus disorder prediction 149 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0089 Lele-ChrLele18 589771 591297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0089 1 76 Single Myb Histone (SMH) Gene Family AT1G49950 38.158 2.46e-06 46.6