Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0079 ATGTCAGACCCCGATCCGTCCAAGAAAGTGGCCGATAGGTATCTCAAGCGTGAAGTCATCGGTGAAGGTACCTATGGAGTAGTATACAAAGCTATTGATACCCAGACGGGACAGACAGTTGCAATTAAGAAAATCCGGCTTGGCAAGCAGAAGGAAGGGGTAAATTTTACTGCCCTTAGAGAGATTAAGATACTTAAAGAGGTCAAAGATCCAAATATTATTGAGTTAATTGACGCTTTCCCGCATAAAGGCAATTTGCATCTTGTCTTTGAATTCATGGACACGGATCTTGAAGCTGTCATAAGAGACCGGAATATTTTTCTTTCACCAGCTGATATAAAATCATACCTTCAAATGACACTGCAAGGTCTCGCTTATTGCCACAAGAAATGGGTTTTGCATAGGGATATGAAACCAAACAACTTGCTGATAGGATCTAATGGACAGCTGAAACTTGCAGATTTTGGTTTAGCTCGAATCTTTGGCAGCCCAGACCGAAGATTTACTCATCAGGTGTTTGCTCGGTGGTATAGAGCACCTGAGCTGTTATTTGGTACCAAGAAATATGGTTCAGGGGTAGATGTTTGGGCAGCAGCTTGTATATTTGCTGAACTTCTTCTTCGTCGACCCTTTTTGCAGGGTTCAAGTGACATTGATCAATTAGGTAAGATTTTTGCAGCATTTGGGACGCCAACTCCGTCTCAGTGGCCAGATATGGTATACCTTCCTGACTATGTTGAGTACCAATATGTTCCTGCCCCTCCTTTTCGTTCTTTATTTCCCACGGCAAGCGATGATGCTTTAGATCTGTTGTCAAAGATGTTTACCTATGATCCAAATGCTAGGATTTCAGCTGTGCAGGCATTAGAGCACAGGTACTTTTCCTCAGCACCTCTGCCCACAGAACCATGCCAGCTTCCTAGACCTGCCCCTAAAAAGGAATCTAGGGCTTCTGATTTCAATCCACATGAGGGTCCAACTGTTCTATCGCCTCCAAGAAAGTCTCGGAGAGTGATGCCAGGACGTGATGGATTTGAAGAAAATTCACTGCGAGGAGACAATGTAGGGAACTTCAGGCAGACTGCTGGTGATACTACAGGCAAGAATGAACCAGCACCAATGTCAATAGATTTTTCAGTCTTTGGATTAAAATCTCCAAATAGACCTACAATTAACAGTGCTGACAGATCACATTTGAAGAGAAAATTAGATCTTGAATTCCAGCAGCCAGAATGA 1236 0.4304 MSDPDPSKKVADRYLKREVIGEGTYGVVYKAIDTQTGQTVAIKKIRLGKQKEGVNFTALREIKILKEVKDPNIIELIDAFPHKGNLHLVFEFMDTDLEAVIRDRNIFLSPADIKSYLQMTLQGLAYCHKKWVLHRDMKPNNLLIGSNGQLKLADFGLARIFGSPDRRFTHQVFARWYRAPELLFGTKKYGSGVDVWAAACIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPTPSQWPDMVYLPDYVEYQYVPAPPFRSLFPTASDDALDLLSKMFTYDPNARISAVQALEHRYFSSAPLPTEPCQLPRPAPKKESRASDFNPHEGPTVLSPPRKSRRVMPGRDGFEENSLRGDNVGNFRQTAGDTTGKNEPAPMSIDFSVFGLKSPNRPTINSADRSHLKRKLDLEFQQPE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0079 411 CDD STKc_CDK7 13 307 IPR037770 GO:0005675|GO:0008353|GO:0070985
Lele18g0079 411 MobiDBLite consensus disorder prediction 300 411 - -
Lele18g0079 411 Gene3D Transferase(Phosphotransferase) domain 1 95 310 - -
Lele18g0079 411 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Lele18g0079 411 MobiDBLite consensus disorder prediction 394 411 - -
Lele18g0079 411 Gene3D Phosphorylase Kinase; domain 1 4 94 - -
Lele18g0079 411 FunFam Cyclin-dependent kinase D-1 5 94 - -
Lele18g0079 411 MobiDBLite consensus disorder prediction 353 368 - -
Lele18g0079 411 ProSiteProfiles Protein kinase domain profile. 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g0079 411 Pfam Protein kinase domain 16 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g0079 411 SMART serkin_6 14 294 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele18g0079 411 FunFam Putative cyclin-dependent kinase 7 95 310 - -
Lele18g0079 411 PANTHER CELL DIVISION PROTEIN KINASE 12 300 - -
Lele18g0079 411 ProSitePatterns Protein kinases ATP-binding region signature. 20 44 IPR017441 GO:0005524
Lele18g0079 411 SUPERFAMILY Protein kinase-like (PK-like) 10 300 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0079 Lele-ChrLele18 525864 528575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0079 4 408 Core Cell Cycle Gene Families AT1G18040 74.074 0.0 614
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK7 Lele18g0079 Pkinase 2.2e-72 CL0016