Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0072 ATGCTTTTCCACGTCCCAAAACTTGCAGAAGATAAATCAAGTTGGGAATTGACAGAACGCGAAGCAGAGTTCCACATGAGACTGGAGCTAAGGGATGATGCTTTTATAAAACAGAAAGACATTCCTGAGGCAAAATATGATTGGCAGTGGCAGTGGGACCCTCGCACCCAAAATCTGACCCTGTGCACTCTTCTCTCTCTTCCCCCCATTCTTACCATGCCTGATGCAACAGAGGCTTCACAATCACAGCACATCAAATGCACGAGGCCTAGGACTCAATTCGCGCATCTCATTTCCCTAACAGATCCCAACCCACAAATCCCATCCCTGCCCCAATCCACTCGCCGCAAACCCACCCATTCCTCTATCCTCTCTGCCTCCTACCACGACACTTCCGGTGAAACCGCACGGCCCAGCCTCAATGCCAACAAAAAGAAGACCAATTTCTCCGCCGCAACCTTCAGAGGATTTGGCTGCACTGCGGGCAACTCGCGCCAGGCATCGATTCCAGCGGTCATTCGGACCTCGGTTGATTGGCGACAGACCAAAGCCAGAAAGAAGAAGCACAAGAGGAATGGTGCCACCAATGTGAGCGGTCCAGGTGTTCTTGATGATTCAAATCCTGTTTCCGTTAGTTGTGTTGATTTCCAAGATGTTTGGTGTTGCCCTGGAATTGGGTTTTCGGCGGATGTTGCTGCCCCTGCGGATAGCGTTGTAAGGAAGAATGGCCCTACCAGAGGGAAGACTGATTTGGAGAAGATGACCCACAGCCACAGGGAGGTATTCGGACGTATTTCTCTATCTTTCTTCTTTTCAATGTGGTGCTTATATGGAAATTTCAGTTTTATCTGCCTAACGGGGCCTCATCATCGTAATATTAGCAGCGATTCACGAGTCGCCGAGTCCTTTGGTACTGCTGGATCCTACCGCCATGTTCCACTTTCACTTCCTTCCTCTCATAACTTCGCTGGGGTTGGTTCCCTCTCATCCATCCTTCACCTTTTTTTTGTTGTCAACAGTCATAACTTACCAAACCTTGAGTCGCGTGTCTTTTCATATTTGGTCGCTGCTGGGCCAATGAAGATGATGCTGCTTCAAGGAAATCTGCTAATGGGGGGAAGATTGAATTCTCGCGACCATTTTAGAGACTGGAGACTTGATGTTGATAACATGTCTTATGAGCAATTGCTGGAGCTTGGTGAGAGGATTGGTTATGTGAACACTGGACTTAAAGAAGACGACATAGGACGTTACATTAGGAAATATAAGCTTTCCAAGTTCAATGAGACTTCAAATCGTCAAGTTGACAACAAGTGCTGCATTTGTCAGGTGAGCTTATTAGAATTAATTTCCTCATTTAAAGGTTTGTCACAGTGCTCTACTGCTTTAATCCATATTGCACGCCGTGTACAGGAAGAATACGAAGCAGATGATGAGGTGGGAAGGCTAAGTTGTGGACACGACTATCACTTTCAGTGTTTAAGGCAATGGCTCGAACAGAAAAATTGCTGCCCAGTGTGTAAGCAAGAAGTTGTCAGTCGTCACTCCGCGGCCAAGTCCTGA 1563 0.4722 MLFHVPKLAEDKSSWELTEREAEFHMRLELRDDAFIKQKDIPEAKYDWQWQWDPRTQNLTLCTLLSLPPILTMPDATEASQSQHIKCTRPRTQFAHLISLTDPNPQIPSLPQSTRRKPTHSSILSASYHDTSGETARPSLNANKKKTNFSAATFRGFGCTAGNSRQASIPAVIRTSVDWRQTKARKKKHKRNGATNVSGPGVLDDSNPVSVSCVDFQDVWCCPGIGFSADVAAPADSVVRKNGPTRGKTDLEKMTHSHREVFGRISLSFFFSMWCLYGNFSFICLTGPHHRNISSDSRVAESFGTAGSYRHVPLSLPSSHNFAGVGSLSSILHLFFVVNSHNLPNLESRVFSYLVAAGPMKMMLLQGNLLMGGRLNSRDHFRDWRLDVDNMSYEQLLELGERIGYVNTGLKEDDIGRYIRKYKLSKFNETSNRQVDNKCCICQVSLLELISSFKGLSQCSTALIHIARRVQEEYEADDEVGRLSCGHDYHFQCLRQWLEQKNCCPVCKQEVVSRHSAAKS 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0072 520 MobiDBLite consensus disorder prediction 101 120 - -
Lele18g0072 520 SUPERFAMILY RING/U-box 433 514 - -
Lele18g0072 520 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 416 517 IPR013083 -
Lele18g0072 520 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 116 511 IPR045191 GO:0061630
Lele18g0072 520 Pfam Ring finger domain 472 508 IPR001841 -
Lele18g0072 520 ProSiteProfiles Zinc finger RING-type profile. 439 508 IPR001841 -
Lele18g0072 520 MobiDBLite consensus disorder prediction 180 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0072 Lele-ChrLele18 492925 496794 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0072 369 512 C3H Transcription Factor Family AT2G15530 38.356 2.13e-25 108