LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0051	ATGGATGTCAAAGGAAGAGGAAGCAGCGCCCTCACTCTCCAAGCCGACGTCGTCGACGACCTCGACCTCCGACGAGGCCCTTGGACCGTCGACGAGGACCTCACGCTCATCAATTACATCACCACTCAAGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTCAGCCGGCCTCAAACGTACTGGCAAGAGCTGCAGATTGAGGTGGCTCAACTATCTCCGTCCCGATGTTCGACGAGGAAATATCACACTCGAAGAACAGCTCATGATTCTAGAACTTCATTCTCGCTGGGGAAACAGGTGGTCCAAGATAGCCCAGTATTTGCCGGGAAGAACCGACAATGAGATCAAGAATTACTGGAGAACCCGTGTCCAAAAGCATGCCAAACAACTCAAATGTGACGTGAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCGAGGCTGGTGGAGCGCATTGAAGCAGCTGCAGCCACGGCCGCTACTGCCATGACAACGGCGAGTTCTCAGACATTATCTGCCGCCACAACCGTCACCACAAATTCCACATACAATCATTACAATAATAACATGGAAGTTGAGAATGGGAACATGCTGATGAACCCGGCCATGATGAATAATAATGACTTTGGAGGCTCCCAGGTCACGCAGAGCTACACGCCGGAAAACAGCAGCACAGGCGCTTCATCGGACTCGTTCGGGACACAGGTTTCGCCGGTGTCGGAATTGACTGATTATTACAGCACAGTCGCTAATCAGGATTATTACCAACCCTCTCATATCAGCTACTCCGATGGCATCACCAGCCCATCTGGGTTATACCCTCAAGGATTGGATTATCCCCAGTTGATGGAGCCAAGCAACCCGTGGATTCAGGGCGGGGACACGTTGGACAATTTGTGGAATGTTGAGAATATGGTGTTTTTACAGCAGCAGCTCAATATGGACAGCGTGTAA	963	0.513	MDVKGRGSSALTLQADVVDDLDLRRGPWTVDEDLTLINYITTQGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIEAAAATAATAMTTASSQTLSAATTVTTNSTYNHYNNNMEVENGNMLMNPAMMNNNDFGGSQVTQSYTPENSSTGASSDSFGTQVSPVSELTDYYSTVANQDYYQPSHISYSDGITSPSGLYPQGLDYPQLMEPSNPWIQGGDTLDNLWNVENMVFLQQQLNMDSV	320

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0051	320	Gene3D	-	25	77	-	-
	Lele18g0051	320	CDD	SANT	27	72	IPR001005	-
	Lele18g0051	320	CDD	SANT	82	121	IPR001005	-
	Lele18g0051	320	FunFam	MYB transcription factor	82	145	-	-
	Lele18g0051	320	ProSiteProfiles	Myb-like domain profile.	20	72	IPR001005	-
	Lele18g0051	320	ProSiteProfiles	Myb-like domain profile.	73	123	IPR001005	-
	Lele18g0051	320	SUPERFAMILY	Homeodomain-like	22	119	IPR009057	-
	Lele18g0051	320	SMART	sant	24	74	IPR001005	-
	Lele18g0051	320	SMART	sant	77	125	IPR001005	-
	Lele18g0051	320	MobiDBLite	consensus disorder prediction	212	238	-	-
	Lele18g0051	320	Gene3D	-	82	145	-	-
	Lele18g0051	320	FunFam	Myb transcription factor	25	77	-	-
	Lele18g0051	320	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	22	203	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele18g0051	320	Pfam	Myb-like DNA-binding domain	25	72	IPR001005	-
	Lele18g0051	320	Pfam	Myb-like DNA-binding domain	78	121	IPR001005	-
	Lele18g0051	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	20	72	IPR017930	-
	Lele18g0051	320	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	73	127	IPR017930	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0051	Lele-ChrLele18	385934	387572	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0051	1	305	MYB Transcription Factor Family	AT3G06490	55.901	1.16e-90	271

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele18g0051		Myb_DNA-binding	5.7e-14	CL0123