Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0024 ATGGCTCTCTCTTCCATTTCCATCCCCACCCTCTCTCTCTTCTTCATCTCTCTCTTCATTCTCCCTCTCTCTCCTGCTTCTTCCCTCCCGCTTGTCCCCTCCCAGTGCCTCAAGGTTTCCTCCTCCCAGTTCGTCTCCTCCGTCTCTCAGGTCCTCCAAGTTTTGAACCAGGTCGTTTCCGTCTTGTCCCGCTTCGCCGATTTCTCCGGTGATTCCCGCCTCTCCCATGCAATTTCCGACTGCCTCGATTTGCTCGACTCCTCTTCCGACGACCTTTCCTCCTCCGCTTCTGCTTCTCAATCTTCCCAGGGCAAGCATAACGGTACTGGAAACCTGAGCGCCGATTTAAGGACGTGGTTGAGCGCCGCACTGGCGAATCCGGAGACATGTAAGGACGGTTTTGAAGGCACCAACAGCATTGTGAGCGGTCTCATATCCGCTGGGCTGGGACAGGTGACCTCCTTGGTGCAGGAGCTGCTGGCCCAGGTGCACCCTGTTTCGGACCACTTCTCCGGCACCAACAGCCGCTTGCCTTCGTGGATTAAACCCGGCGACCGCAAGCTCTTGCAAGCCGGTGGGGTGCCGGTAGACGCGGTGGTGGCTGCAGATGGGACTGGAAATTACACGAAGGTGATGGATGCAGTGCTTGCGGCTCCTGACTATAGTATGAAACGCTATGTCATATACGTAAAGAGGGGTGTTTACACCGAGAACGTGGAGATCAAAAAGAAGAAGTGGAACCTCATGATGATTGGTGACGGTATGGACGCCACCGTTATCTCCGGCAACCGTAGTTTCGTCGGTGGCTTTACCACCTTCCGCACCGCTACATTTGCTGTCAGCGGCAGAGGGTTCATAGCGCGAGACGTAGCGTTCCAGAACACTGCAGGCCCCGAGATGCACCAAGCAGTGGCTCTGAGATCCGACTCCGACCTCTCTGTGTTCTACCGATGCGGCATTTATGGATACCAAGACAGCCTCTACACCCACACAATGCGCCAATTCTTCAGAGAATGCAAGATCGCCGGCACGGTGGACTTCATATTCGGCGACGCCACCGCCGTGTTCCAGAACTGCCAGCTGCTGGCAAAGAAGGGCCTGCCAAACCAGAAGAACACCATCACGGCGCAAGGGCGAAAAGACCCCAACGAGCCCACAGGTTTCTCGTTCCAGTTCTGCAACGTGACGGCAGATTCGGACCCGGTAGCCTCAATGAACAGCACGCAGACGTACCTGGGAAGGCCGTGGAAGACGTACTCGAGAACGGTGTTCATGCAATCGTACATGAGTGAAGTGCTGAGGCCAGAAGGGTGGCTGGAGTGGAACGGGGAGTTCGCGTTGGAGACGCTGTACTACGCGGAGTACCAGAACTACGGAGCAGGAGCGGCGCTGGAGAAGAGAGTGAAATGGGGAGGGTACAGAGCGCTGAATGATTCGAGGCAGGCCAGTAACTTCACTGTGACTCAGTTTATAGAGGGCAATCTTTGGTTACCTTCAACAGGCGTCACTTACACCGCCGGCTTAGGTGTTTGA 1533 0.5577 MALSSISIPTLSLFFISLFILPLSPASSLPLVPSQCLKVSSSQFVSSVSQVLQVLNQVVSVLSRFADFSGDSRLSHAISDCLDLLDSSSDDLSSSASASQSSQGKHNGTGNLSADLRTWLSAALANPETCKDGFEGTNSIVSGLISAGLGQVTSLVQELLAQVHPVSDHFSGTNSRLPSWIKPGDRKLLQAGGVPVDAVVAADGTGNYTKVMDAVLAAPDYSMKRYVIYVKRGVYTENVEIKKKKWNLMMIGDGMDATVISGNRSFVGGFTTFRTATFAVSGRGFIARDVAFQNTAGPEMHQAVALRSDSDLSVFYRCGIYGYQDSLYTHTMRQFFRECKIAGTVDFIFGDATAVFQNCQLLAKKGLPNQKNTITAQGRKDPNEPTGFSFQFCNVTADSDPVASMNSTQTYLGRPWKTYSRTVFMQSYMSEVLRPEGWLEWNGEFALETLYYAEYQNYGAGAALEKRVKWGGYRALNDSRQASNFTVTQFIEGNLWLPSTGVTYTAGLGV 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0024 510 SMART PMEI_2 27 162 IPR006501 GO:0004857
Lele18g0024 510 Pfam Pectinesterase 197 494 IPR000070 GO:0030599|GO:0042545
Lele18g0024 510 SUPERFAMILY Pectin lyase-like 195 507 IPR011050 -
Lele18g0024 510 CDD PMEI-like_4 10 167 - -
Lele18g0024 510 PANTHER PECTINESTERASE 33 498 - -
Lele18g0024 510 ProSitePatterns Pectinesterase signature 2. 341 350 IPR033131 -
Lele18g0024 510 Gene3D - 194 508 IPR012334 -
Lele18g0024 510 Pfam Plant invertase/pectin methylesterase inhibitor 53 143 IPR006501 GO:0004857
Lele18g0024 510 Gene3D Invertase/pectin methylesterase inhibitor family protein 32 165 IPR035513 -
Lele18g0024 510 FunFam Pectinesterase 192 508 - -
Lele18g0024 510 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 46 155 IPR035513 -
Lele18g0024 510 TIGRFAM PME_inhib: pectinesterase inhibitor domain 47 141 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0024 Lele-ChrLele18 194268 196687 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0024 12 508 Carbohydrate Esterase AT3G43270 62.669 0.0 687