Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele18g0020 ATGAAGTTTGAAGGCCCAGTCAATCGAGGAAGAAGATCCAGCAAGAAGCCAAGATTGGTGGAGGAAATGGCAATCCCTTCGACTGAGGCAGTGGACGTTGATGCTTTCATCTGGAATAAGGGCACAAGCAAATTCAATGCCATCTCAGTCGAGCAGTACACCCACGATCGAGACCTCCACCTCTCGATTATGGCTTCTCTAGGTAGAGCAACGCCTGCCGCGAAAACCTTCATCGACCTCTCCGACGGCGATGACGATGACGAGGTGAGAATTCTTAGGTTTGAGCCTAAAACCACCCCTTTCGGGAAACGTAGGAGGCAGTCGAGGTTTGAAACAGGGGAATCTTCCAATTGTCCACCATTTGTTTGCGAAATCTGTGCTGATACCAAGACTGCAAACGAATCGTTTAACATCAGTGGTTGCTCTCACGCTTATTGTGTAGGCTGTGTGATTAGGTATGTGGGAACGAAGCTACAAGAAAATGTTGTGAACATTAGATGTCCGGTGCCAGAGTGTGGAGGACTGTTGGAGCCTGAGGATTGCCGCGGGATCCTTCCTCCGGAAGTGTACGATCGGTGGGGTAACGCATTGTGTGAGGCCGTTATACTGGCGGAGGAGAAGTTCTACTGCCCATATAAGGACTGTTCTGCGCTGATGATTGATGATGGAGGACAAGGGAGTATCACAGAGTCGGAGTGTCCCAACTGCAGGAGACTGTTCTGTGCGCAGTGTAAGGTGCCTTGGCATTCAGGAATTGATTGCCCTGAGTTTCAGAAATTGGGCAAGGACGAGAGAGAGAATGAAGATATTATGCTGATGCAACTTGCTCGGAACCATAAGTGGAGGAGGTGCCCCCTGTGTAGGTTCTACGTTGAGAAGTCTTCTGGCTGTCTCTATATGAAATGCAGGTGTGGAATTGCCTTCTGCTATAACTGCGGAACTATTTCAAGAGATAATTCCCATTATTGCTATAACTGTAGACGCTAA 987 0.4853 MKFEGPVNRGRRSSKKPRLVEEMAIPSTEAVDVDAFIWNKGTSKFNAISVEQYTHDRDLHLSIMASLGRATPAAKTFIDLSDGDDDDEVRILRFEPKTTPFGKRRRQSRFETGESSNCPPFVCEICADTKTANESFNISGCSHAYCVGCVIRYVGTKLQENVVNIRCPVPECGGLLEPEDCRGILPPEVYDRWGNALCEAVILAEEKFYCPYKDCSALMIDDGGQGSITESECPNCRRLFCAQCKVPWHSGIDCPEFQKLGKDERENEDIMLMQLARNHKWRRCPLCRFYVEKSSGCLYMKCRCGIAFCYNCGTISRDNSHYCYNCRR 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele18g0020 328 SMART ibrneu5 264 326 IPR002867 -
Lele18g0020 328 SMART ibrneu5 191 254 IPR002867 -
Lele18g0020 328 ProSitePatterns Zinc finger RING-type signature. 141 150 IPR017907 -
Lele18g0020 328 Pfam IBR domain, a half RING-finger domain 201 254 IPR002867 -
Lele18g0020 328 SUPERFAMILY RING/U-box 198 259 - -
Lele18g0020 328 FunFam RBR-type E3 ubiquitin transferase 256 328 - -
Lele18g0020 328 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 84 323 IPR031127 GO:0004842|GO:0016567
Lele18g0020 328 SUPERFAMILY RING/U-box 119 200 - -
Lele18g0020 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 204 IPR013083 -
Lele18g0020 328 SUPERFAMILY RING/U-box 265 327 - -
Lele18g0020 328 FunFam RBR-type E3 ubiquitin transferase 119 204 - -
Lele18g0020 328 Gene3D - 251 328 - -
Lele18g0020 328 ProSiteProfiles TRIAD supradomain profile. 119 328 IPR044066 -
Lele18g0020 328 ProSiteProfiles Zinc finger RING-type profile. 123 171 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele18g0020 Lele-ChrLele18 168709 170005 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele18g0020 123 314 C3H Transcription Factor Family AT2G19610 29.851 1.71e-24 101