LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele18g0003	ATGGCGGCTGCTTTTTCAACGGTGTCAAATGTCGGGTCTTTGCCGAGTCCACGGAGCGGTACTCAGATCAAAGTTATAATGCATTTTACCAGCCTGGTTCGGGCCAGTTCTGAGGAAGCACCTTTAGAATCAAAACTTACTCACAAGGTGTATTTTGACATAAGTATTGAAAATCCTGTGGGGAAGCTTGCTGGAAGGATTGTGATTGGACTCTATGGTGATGATGTGCCCCAAACAGTAGAGAACTTCCGTGCCCTTTGCACAGGAGAGAAGGGCTTTGGGTACAAAGGTTCTACATTCCATCGTGTAATAAAGGATTTCATGATTCAGGGAGGGGACTTTGACAAGGGGAATGGAATTGGAGGTAAAAGTATTTATGGCCGCACTTTCAAAGATGAGAATTTCAAGTTGTCTCATGTAGGACCAGGAGTTGTTAGTATGGCAAATGCGGGCCCCAACACCAATGGGAGCCAATTCTTTATATGCACTGTCATGACACCCTGGCTGGATCAGAGGCATGTAGTATTTGGCCAAGTTTTGGAAGGCATGGACATTGTTAGGTTAATTGAATCACAGGAGACAGATCGAGGTGACCGTCTGAGGAAGAAGGTGGTTATCATTGACTCTGGTGAGCTTCCCATAGCTTGA	648	0.4552	MAAAFSTVSNVGSLPSPRSGTQIKVIMHFTSLVRASSEEAPLESKLTHKVYFDISIENPVGKLAGRIVIGLYGDDVPQTVENFRALCTGEKGFGYKGSTFHRVIKDFMIQGGDFDKGNGIGGKSIYGRTFKDENFKLSHVGPGVVSMANAGPNTNGSQFFICTVMTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRLRKKVVIIDSGELPIA	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele18g0003	215	FunFam	Peptidyl-prolyl cis-trans isomerase	35	215	-	-
	Lele18g0003	215	PANTHER	PEPTIDYL-PROLYL CIS-TRANS ISOMERASE	49	212	-	-
	Lele18g0003	215	Gene3D	-	35	214	IPR029000	-
	Lele18g0003	215	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	171	186	IPR002130	GO:0000413\|GO:0003755
	Lele18g0003	215	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	100	112	IPR002130	GO:0000413\|GO:0003755
	Lele18g0003	215	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	158	170	IPR002130	GO:0000413\|GO:0003755
	Lele18g0003	215	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	71	86	IPR002130	GO:0000413\|GO:0003755
	Lele18g0003	215	PRINTS	Cyclophilin peptidyl-prolyl cis-trans isomerase signature	143	158	IPR002130	GO:0000413\|GO:0003755
	Lele18g0003	215	Pfam	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD	62	209	IPR002130	GO:0000413\|GO:0003755
	Lele18g0003	215	ProSitePatterns	Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature.	95	112	IPR020892	GO:0003755\|GO:0006457
	Lele18g0003	215	ProSiteProfiles	Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile.	61	211	IPR002130	GO:0000413\|GO:0003755
	Lele18g0003	215	SUPERFAMILY	Cyclophilin-like	44	212	IPR029000	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele18g0003	Lele-ChrLele18	36496	45408	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele18g0003	65	209	U-box Gene Family	AT5G67530	47.945	1.37e-34	127

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele18g0003	18	36496	45408	Lele19g0003	19	28809	35857	hybridization