LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele17g1516	ATGGATGTAAAAAGAATAGGAAGAACCTCCCCCACTCTCCAAGCCGACGTCGTCGACGACCTCGACCTCCGACGAGGCCCTTGGACCGTGGACGAGGACCTCACCCTCTTCAATTACATCACCACTCACGGCGAAGGTCGCTGGAACTCCCTTGCTCGCTCCGCTGGCCTCAAACGTACTGGCAAGAGCTGCAGATTGAGGTGGCTCAACTATCTCCGTCCCGACGTTCGACGCGGAAATATTACTCTGGAAGAACAGCTCATGATCCTCGAACTTCATTCTCGCTGGGGAAACAGGTGGTCCAAGATAGCCCAGTATTTGCCGGGAAGAACCGATAACGAGATCAAGAATTACTGGAGAACCCGTGTCCAAAAGCATGCCAAGCAACTCAAATGTGACGTTAATAGCAAGCAATTCAAGGACACCATGCGCTACCTTTGGATGCCAAGGCTGGTGGAGCGCATTCAAGCCGCTGCCGCCACGACAACCGCGAGTTCTCAGACATTATCTGCCGCCGCAACAAATTCCACATACAATCATTACAATAATAACATGGAAGTTGAGAATGGGAACATGCTGATGAACCCGGCAATGATGAATAATAATGACTTTGGAGGCTCCCAGGTCACGCAGAGCTACACGCCGGAAAACAGCAGCACTGGCGCTTCATCGGACTCGTTCGGAACACAGGTTTCGCCGGTGTCGGAATTGACTGATTATTACAGCACTGTCCCTAATCAGGATTACTACCAACCCTCTCAGATCAGTTACTCAGATTGCATCACCAGCCCATCTGGTTTATACCCTCAAGGATTGGATTATTCCCAGTTGATGGAGCCAAGCAACCCGTGGATTCAGGGCGGTGACACGTTGGACAATTTGTGGAATGTCGATAATATGATGCTCTTACAGCAGCAGCTCAATATTGACAGCATGTAA	939	0.5037	MDVKRIGRTSPTLQADVVDDLDLRRGPWTVDEDLTLFNYITTHGEGRWNSLARSAGLKRTGKSCRLRWLNYLRPDVRRGNITLEEQLMILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKHAKQLKCDVNSKQFKDTMRYLWMPRLVERIQAAAATTTASSQTLSAAATNSTYNHYNNNMEVENGNMLMNPAMMNNNDFGGSQVTQSYTPENSSTGASSDSFGTQVSPVSELTDYYSTVPNQDYYQPSQISYSDCITSPSGLYPQGLDYSQLMEPSNPWIQGGDTLDNLWNVDNMMLLQQQLNIDSM	312

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele17g1516	312	PANTHER	MYB TRANSCRIPTION FACTOR-RELATED-RELATED	22	209	IPR044676	GO:0003700\|GO:0006355\|GO:0043565
	Lele17g1516	312	CDD	SANT	82	121	IPR001005	-
	Lele17g1516	312	CDD	SANT	27	72	IPR001005	-
	Lele17g1516	312	FunFam	MYB transcription factor	82	145	-	-
	Lele17g1516	312	ProSiteProfiles	Myb-like domain profile.	73	123	IPR001005	-
	Lele17g1516	312	FunFam	Myb transcription factor	25	77	-	-
	Lele17g1516	312	Gene3D	-	82	145	-	-
	Lele17g1516	312	MobiDBLite	consensus disorder prediction	204	230	-	-
	Lele17g1516	312	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	20	72	IPR017930	-
	Lele17g1516	312	Gene3D	-	25	77	-	-
	Lele17g1516	312	SMART	sant	24	74	IPR001005	-
	Lele17g1516	312	SMART	sant	77	125	IPR001005	-
	Lele17g1516	312	SUPERFAMILY	Homeodomain-like	22	119	IPR009057	-
	Lele17g1516	312	ProSiteProfiles	Myb-like domain profile.	20	72	IPR001005	-
	Lele17g1516	312	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	73	127	IPR017930	-
	Lele17g1516	312	Pfam	Myb-like DNA-binding domain	78	121	IPR001005	-
	Lele17g1516	312	Pfam	Myb-like DNA-binding domain	25	72	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele17g1516	Lele-ChrLele17	23637931	23639555	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele17g1516	16	297	MYB Transcription Factor Family	AT3G06490	56.678	3.31e-89	268

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele17g1516		Myb_DNA-binding	8.5e-14	CL0123