Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1495 ATGCCTGATGCAACAGAGGCTTCACAGTCACAGCACATCAAATGCACGAGGCCCAGGACCCAATTCGCACATCTCATTTCCTTAACAGATCCCAACCCACAAATCCCATCCCTGCCCCAATCCTCTCGCCGCAAACCCACCATTTCTTCTATCCTCTCTGCCTCCTGCCACGACACTTCCGGTAAAACCGCACGGCCCAGCCTCAATTCCAACAAGAAGAAGACCAATTTCTCCGCGGCAACCTTCAGAGGATTCGGCTGCACTGCGGGAGCCTCGCGGCAGGTATCGCTTCCGGCGGTCATTCGGACATCGGCTGATTGGCAACAGACCAAAGCCAGAAAGAAGAAGCACAAGACGAATGGTGCCAACGATGTGAGCGGTCAAGGCGTTCTTGATGGTTCAAATCCTGGTTCCGTTACTTGTGTTGATTTTCAAGATGTTCGGAGTGGCCCTGGAATTGGGTTTTCTGCGGATGTTGCTGCTCCTGTGGATAGCGCTGTCGTAAGGAAAAATGGTCCTACTAGAGAGAAGACTGATGTGGAGAAGATGACCCACAGCCACAGTGAGCGATTCACGAGTCGCCCTGAGTCTTTTGCTACAGCCGGATCCTATCGACGTGTTCCACTTCCACTTCCTTCCTCTCATAACTTTGCTGGGATGATGCTGCTTCAAGAAAATCTGCTAATGGGGGGAAGATTGAATTCTCGCGACCACTTTAGAGACTGGAGACTTGATGTTGATAACATGTCTTATGAGCAATTGCTGGAGCTTGGTGAGAGGATTGGTTATGTGAACATTGGACTTAAAGAAGATGATATAGGACGTTACGTTAGGAAATTTAAGCTTTCCAAGTTCAATAAGACTTCAAATCGTCGAGTTGACAACAAGTGCAGCATTTGTCAGGAAGAGTACGAAGCTGATGATGAGGTGGGAAGGCTAAGTTGTGGACACGACTATCACTTTCAATGTTTAAGGCAATGGCTGGAACAGAAAAATTGGTGCCCACTGTGTAAGCAAGAAGTTGTCAGTCGTCACTCGGTGGCCAAAACCTGA 1053 0.4881 MPDATEASQSQHIKCTRPRTQFAHLISLTDPNPQIPSLPQSSRRKPTISSILSASCHDTSGKTARPSLNSNKKKTNFSAATFRGFGCTAGASRQVSLPAVIRTSADWQQTKARKKKHKTNGANDVSGQGVLDGSNPGSVTCVDFQDVRSGPGIGFSADVAAPVDSAVVRKNGPTREKTDVEKMTHSHSERFTSRPESFATAGSYRRVPLPLPSSHNFAGMMLLQENLLMGGRLNSRDHFRDWRLDVDNMSYEQLLELGERIGYVNIGLKEDDIGRYVRKFKLSKFNKTSNRRVDNKCSICQEEYEADDEVGRLSCGHDYHFQCLRQWLEQKNWCPLCKQEVVSRHSVAKT 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1495 350 ProSiteProfiles Zinc finger RING-type profile. 297 338 IPR001841 -
Lele17g1495 350 SMART ring_2 297 337 IPR001841 -
Lele17g1495 350 CDD RING-H2_PA-TM-RING 297 338 - -
Lele17g1495 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 36 341 IPR045191 GO:0061630
Lele17g1495 350 MobiDBLite consensus disorder prediction 175 192 - -
Lele17g1495 350 MobiDBLite consensus disorder prediction 175 197 - -
Lele17g1495 350 SUPERFAMILY RING/U-box 296 344 - -
Lele17g1495 350 MobiDBLite consensus disorder prediction 109 132 - -
Lele17g1495 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 274 347 IPR013083 -
Lele17g1495 350 Pfam Ring finger domain 295 338 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1495 Lele-ChrLele17 23495362 23497563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1495 70 252 C3H Transcription Factor Family AT1G73760 39.189 1.09e-29 113