Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1471 ATGATTTTTTCAACCTGCTCATTCAACATTCCAAATCCGAGCACTTCACAAATTTCCCTTTCACGTTCACGTTCCCGTTCCCGTTCCCGTTCATTCTCCCGCGAGTCGATTTGGGACTCCGCAAAACACACAGCAAAAGGAGCTAGAAGAAAGGGAAAGTTATTTGGGCCGTGTTACCCTCCAAGTTCAGCCTTTTATGGGACCGTGAAATCCTTCTCTCCCTTACCCTGGATTATCTCCGACAGTCGTTTGTTTTGTCGTCCAGTTAAAAGAAAACTGTTTACTCCGAATCCAAGCATCTGGATCACGTTGATTGGACTGCGTTCGCAGTTTTCAGTTTCTTTAGCATTCGGTACTGTATCTGATAGAAAAGATATGAAGAACATTCTTAAGAAGCTTCATATAATGTCTAATCGATCAGAAGATGCAGCAGGATCTACTTCATCAAAAGGCCACAGGTCCAATGATGGTCCATTCTATAAGAAGCCATCAAACTCTCGCCCCCCTCAAAGTTCTGAGCATAAACCCTTTCCGGGGATTTCGAGCTGGTTGCACTCGGTTGCTAACAGGCAGAGTCCGAGTCCTCCATCTTCGAATCTGAAAAGAGGAGAAACAGTGGAACCATCTGATTTAGTTAACAGTGGCGGTTTGGATATTGTTTTGGATTCGGCGAGGCGTGATTCCGGGTCTAGCACTTCCAGGGATCCTGAAGTAGAGGAAGAGTATCAGATACAATTGGCTTTGGAGATGAGTGCAAAGGAGGATCCCGAGGCAGTGCAGATTGAAGCTGTTAAGCAGATCAGTTTGGGTTATTGTGGCCCTGATAATACACCAGCTGAAGTTGTGGCCTACAGATACTGGAATTACAATGCTCTTGGTTATGATGACAAGATCTTGGATGGTTTCTATGATTTTTATGGGATCTTAAACGAGTCTCAGTCAACCTCTGCAAGAATGCCTTCCCTGGTAGATCTGCAAGGTACACCAACATCAGATAGTGTCACTTGGGAAGCGGTCTTGGTCAATAGGGCTGCTGATTCAAATTTGTTGAAACTTGAGCGAAAGGCCCTAGAGTTGGCTGGCAAGTCAAGACCAAATTTTGAAGTAGTTACAAATAGCCATTTGGTGCAGAGGCTTGCCATATTAGTGGCTGACTATATGGGTGGACCGGTTACAGATCCTGGAAGCATGACAAGAGCATGGAGGAGTCTTAGTTACAGTCTGAAAGCAACTCTTGGTAGCATGGTTTTGCCACTTGGTTCTCTGACCATTGGATTGGCTCGGCATCGTGCATTATTATTTAAGGTTTTATCTGATAGCATGGGCATCCCATGCTGCTTGGTCAAAGGACTACATTATACAGGTTCTGATGATGTGGCCATGAACTTTGTCAAGGTTGACGATGGAAGGGAATACATTGTTGACCTGATGGCAGATCCTGGAACAGTCATTCCATCTGATGCAGCTGGATCACATATCGAGTATGATGAACCCTTTTTTGTGGTGAGTCCTTTGTCAAGGGACCTTGATTCCTCCCGCGTAGCGTCATCCAGCAGTGGGATTGGAAGTTCATCTGAAGAAGCTTCAGATTTTGGTACATTTGATAAAAGAAATATATCAAAACAGATTGCCTATTTGGGCAAAGAATCTTATGTAAGCAATCCCACTACAAGTGAAGACGAATCAAAGAGCCCATTGAATGATTTCAAATGTCCCCCTAATGTGGAAAAGTTCACAGTGCAGGAAGCTCCTGGTAGACCAAATCATCCCTACGTTCATGCAAGATCTCCTTCTTGGACTGAAGGGATCAGTTCCCCTGCAGTACGTAGAATGAAAGTGAAATATGTTTCACAATATATGATCGATGCTGCAAAGGGGAATCCTCAGTTAGCTCAAAAACTTCACGATGTTTTACTTGAAAGTGGTGTTGTTGCTCCTCCAAACTTGTTTTCTGAAACTTATCATCAGCAGTTAGGTGCTCCGATTGTTGAGACTAACTCCAACACCGAGGAAAATGAATATGAACGGGAGAAACAGGTAACTCATGCTGATTCCCACCAAAGTCCTTCTGAATTCTTGCCTCCTTTGCCTCCCTACAGAGCTCATCTTAAAGCAATTCCTAGCAGTCAGCTGGAGCACTCTAAGCCTGTAGAAGGTTTAGGGATCAACCTTCCTTTTGATCCTAGGGAAGCAGCCGGACAGATCTTACAATCACATGCAGAAGCAACTCCTAAAAGATACGGGAAAAATGTACCGGTTGCTGCAGCTGCAGCAGCAGCTGCAGCTGTTGTTGCTTCATCAATGGTAGTTGCTGTGGCAAAGTCAAGTACTGACTCAAATATTGAGCTTCCCGTTGCAGCAGCTGCTACTGCTACTGCTGCAGCTGTAGTAGCAACCACTGCGGCTGTTAGTAAACAATATGAACAGGGAAGTCGAAGTGATGGAGATTCAGATGGTGCTTTTTATGAGCAGAAGGGTAGTGATCAGGGAGAACATAGTGTTTTAGGGGCAAACTCACAAGGTGAGAGAATATCTGACAGATCAATAAGCAATGATAGCACAAAATCTGATTCTGCTCTAGATGATGTTGCTGAGAGTGAAATTCCATGCGAGGACATCACACTGGGTGAACGTATTGGGCTTGGATCATATGGGGAGGTGTACCGGGGTGAATGGCATGGAACTGAAGTAGCTGTAAAGAGATTTTTGGACCAAGACATCTCTGGCGAATCTCTTGAGGAATTCGTTAGTGAGGTCCGAATAATGAAAAGGCTCAGGCATCCAAATGTCGTTCTCTTCATGGGAGCTGTAACTAAGCCTCCAAATCTTTCAATTGTTACAGAATTTCTTCCCAGAGGAAGTTTGTATAGATTAATCCACCGGCCTAACAATCAATTAGACGAGCGAAGACGACTGAGGATGGCCCTAGATGCTGCGCGAGGAATGAACTATTTGCATAACTGCTCTCCAGTGATAGTCCATCGTGATTTGAAGTCTCCAAATCTTCTTGTTGACAAAAACTGGGTTGTAAAGGTATGTGACTTCGGTTTATCACGAATGAAGCACAGTACATTCCTTTCCTCAAGATCAACTGCAGGAACAGCAGAGTGGATGGCTCCAGAAATGTTAAGAAATGAGCCTTCAAATGAGAAGTGTGATGTTTTCAGTTTTGGGGTCATATTATGGGAGCTGTCTACGATGCAGCAACCCTGGGGAGGGATGAATCCGATGCAAGTTGTTGGTGCTGTGGGTTTCCAACATCGCCGACTTGAAATCCCAGATGATATTGACCCTGCCATCGCTGATATTATCAGGAAATGCTGGCAGACAGATCCAAAGTTGAGGCCGAGCTTTGCCGAGATAATGGTGGCTCTGAAGCCATTGCAGAAGCCAATTATTAGTTCACAAGTGCAGAGATCAAGCGCTCAGTCATCGCGAGTGGCAGAAACTCCACTCCAGACTCTCTCTGCTCATTCACGCACATCCTCTCAACACGTGTTCGTCATCTTCATCTGCCTCACCACAAATCCTGCAAGCTCTGTTTTCAATCATATGCTGATGACATCATGCAACATTGGTCAGCAGTCTTCCTTCAATTGCGAGCAAGAGGAACACTCGCCCATTAAGCCCCAGACCATTTCCCCACTATATCCTATGTGTCATCTTCTTGCTGCCATTCCTCATTCATCAGTAGTTCATAGGCGGATCTCAGTGAAATCTCCATTTGTTGACATGGTTCAATAG 3744 0.4474 MIFSTCSFNIPNPSTSQISLSRSRSRSRSRSFSRESIWDSAKHTAKGARRKGKLFGPCYPPSSAFYGTVKSFSPLPWIISDSRLFCRPVKRKLFTPNPSIWITLIGLRSQFSVSLAFGTVSDRKDMKNILKKLHIMSNRSEDAAGSTSSKGHRSNDGPFYKKPSNSRPPQSSEHKPFPGISSWLHSVANRQSPSPPSSNLKRGETVEPSDLVNSGGLDIVLDSARRDSGSSTSRDPEVEEEYQIQLALEMSAKEDPEAVQIEAVKQISLGYCGPDNTPAEVVAYRYWNYNALGYDDKILDGFYDFYGILNESQSTSARMPSLVDLQGTPTSDSVTWEAVLVNRAADSNLLKLERKALELAGKSRPNFEVVTNSHLVQRLAILVADYMGGPVTDPGSMTRAWRSLSYSLKATLGSMVLPLGSLTIGLARHRALLFKVLSDSMGIPCCLVKGLHYTGSDDVAMNFVKVDDGREYIVDLMADPGTVIPSDAAGSHIEYDEPFFVVSPLSRDLDSSRVASSSSGIGSSSEEASDFGTFDKRNISKQIAYLGKESYVSNPTTSEDESKSPLNDFKCPPNVEKFTVQEAPGRPNHPYVHARSPSWTEGISSPAVRRMKVKYVSQYMIDAAKGNPQLAQKLHDVLLESGVVAPPNLFSETYHQQLGAPIVETNSNTEENEYEREKQVTHADSHQSPSEFLPPLPPYRAHLKAIPSSQLEHSKPVEGLGINLPFDPREAAGQILQSHAEATPKRYGKNVPVAAAAAAAAAVVASSMVVAVAKSSTDSNIELPVAAAATATAAAVVATTAAVSKQYEQGSRSDGDSDGAFYEQKGSDQGEHSVLGANSQGERISDRSISNDSTKSDSALDDVAESEIPCEDITLGERIGLGSYGEVYRGEWHGTEVAVKRFLDQDISGESLEEFVSEVRIMKRLRHPNVVLFMGAVTKPPNLSIVTEFLPRGSLYRLIHRPNNQLDERRRLRMALDAARGMNYLHNCSPVIVHRDLKSPNLLVDKNWVVKVCDFGLSRMKHSTFLSSRSTAGTAEWMAPEMLRNEPSNEKCDVFSFGVILWELSTMQQPWGGMNPMQVVGAVGFQHRRLEIPDDIDPAIADIIRKCWQTDPKLRPSFAEIMVALKPLQKPIISSQVQRSSAQSSRVAETPLQTLSAHSRTSSQHVFVIFICLTTNPASSVFNHMLMTSCNIGQQSSFNCEQEEHSPIKPQTISPLYPMCHLLAAIPHSSVVHRRISVKSPFVDMVQ 1247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1471 1247 SMART serkin_6 873 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1471 1247 MobiDBLite consensus disorder prediction 665 691 - -
Lele17g1471 1247 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 569 1137 - -
Lele17g1471 1247 SUPERFAMILY Protein kinase-like (PK-like) 865 1150 IPR011009 -
Lele17g1471 1247 FunFam Serine/threonine-protein kinase isoform 1 864 951 - -
Lele17g1471 1247 ProSiteProfiles Protein kinase domain profile. 873 1133 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1471 1247 FunFam Serine/threonine-protein kinase CTR1 952 1135 - -
Lele17g1471 1247 MobiDBLite consensus disorder prediction 831 857 - -
Lele17g1471 1247 ProSitePatterns Protein kinases ATP-binding region signature. 879 900 IPR017441 GO:0005524
Lele17g1471 1247 MobiDBLite consensus disorder prediction 669 684 - -
Lele17g1471 1247 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 239 258 IPR003903 -
Lele17g1471 1247 MobiDBLite consensus disorder prediction 552 572 - -
Lele17g1471 1247 ProSitePatterns Serine/Threonine protein kinases active-site signature. 992 1004 IPR008271 GO:0004672|GO:0006468
Lele17g1471 1247 Gene3D Transferase(Phosphotransferase) domain 1 952 1137 - -
Lele17g1471 1247 MobiDBLite consensus disorder prediction 184 204 - -
Lele17g1471 1247 PRINTS Tyrosine kinase catalytic domain signature 1052 1074 IPR001245 GO:0004672|GO:0006468
Lele17g1471 1247 PRINTS Tyrosine kinase catalytic domain signature 986 1004 IPR001245 GO:0004672|GO:0006468
Lele17g1471 1247 PRINTS Tyrosine kinase catalytic domain signature 947 960 IPR001245 GO:0004672|GO:0006468
Lele17g1471 1247 PRINTS Tyrosine kinase catalytic domain signature 1033 1043 IPR001245 GO:0004672|GO:0006468
Lele17g1471 1247 PRINTS Tyrosine kinase catalytic domain signature 1096 1118 IPR001245 GO:0004672|GO:0006468
Lele17g1471 1247 Pfam Protein tyrosine and serine/threonine kinase 873 1124 IPR001245 GO:0004672|GO:0006468
Lele17g1471 1247 MobiDBLite consensus disorder prediction 140 177 - -
Lele17g1471 1247 Pfam Ethylene-responsive protein kinase Le-CTR1 279 484 - -
Lele17g1471 1247 Gene3D Phosphorylase Kinase; domain 1 866 950 - -
Lele17g1471 1247 MobiDBLite consensus disorder prediction 139 240 - -
Lele17g1471 1247 CDD STKc_MAP3K-like 879 1122 - -
Lele17g1471 1247 MobiDBLite consensus disorder prediction 807 863 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1471 Lele-ChrLele17 23385962 23394464 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1471 123 1145 MAP Kinase Kinase Kinase AT1G73660 63.417 0.0 1174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Lele17g1471 PK_Tyr_Ser-Thr 1.3e-67 CL0016