Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1456 ATGGTAGCTGCCGTCGCCGTCGGTAACGGTAATTCAGAAAAAGACTCCGGCACAACTGACATTTCAACATCTCAGAGGAACGTCGACACGCTTTGCCTCACAGCACAATACCCAGAAACCTGCAAGAAGAGCGTCGAGAGTGTAGCAGTGTCCGGCAACAACACCGACATGAAGACCCTCGTCAAAGCCGCATTTAACGCCACCGCGGAAGAGATCACCAATCAGATGAGAAACTCCTCACTGTTCCAAGGGCTGGAGAAGGACCCCAGCACGAAAGACGCCTTGGCCGTGTGCGACGAGGTGTTTGGTTACGCAGTGAAGAACATCAATGACTCCATCGATAAGGTGGATCAGTTCGAACTGAGCAATCTGGGCCAATTCGCCTACGACCTCAAGGTATGGCTGTCGGGAGCCATAACCATGCAGCACACGTGCTTGGATGGCTTTAATAACTCCACCACCGAGGCTGGCCAGACCATGGCTCGAGCATTGAAGACAGCGTTGGAGATGAGTAACAACGCGCTGGATATAGTGGAAGGGTTCTCGAGCGTCGTAGAGGATTTCAACTTGGGCGACGCACTCGATGATGTTGAAAACACGGCCGACGTCAGAAACAAGAGTAGGAAGCTGCTGTCGACTGCCTCCTCCTCGGCCGAAGAGTTGGCTGCGGATGATATACCAACGTGGGTGGGCGGCCACCAGAGAAGACTGTTGCAGGCGGGGGCTAACGGGTTGAAGGCGGACGCTGTGGTTGCTCAGGACGGGACTGGTCAGTTCAAGACATTGACGGACGCACTCAACACAGTTCCCCCGACCAACAGCAAGCCCTTTGTCATATACGTCAAGGCTGGGGTGTACAAGGAGGAAGTAACCGTAGCCGCAAACACCATGAACTTTGTGATCATCGTCGGAGATGGCGCCACGAAGACCAGGTTCACGGGAGGCAAATCCCAAAAGGATGGCGTCACAACTTACCACACGTCATCTTTCTCGGTGAATGCCAATAACTTCATGGCAATAGACGTAGGGTTCGAGAACACGGCGGGACCTAGCGCGGGGCCGGCTGTGGCGCTGAGGATAACCGGAGACAAGGCAGTAGTATACAGGTGCTACATGGACGGACACCAGGACACACTGTATCCGAGTGCGTACAGGCAGTTCTACAGGGACTGCATGGTGTGGGGGACCATCGACTTCATATTCGGGGATGCGGTGACAGTATTCCAGAACTGCACAATAATGGTGAAGAGGGGTGTGGATGGGCAGGAAGGCGTGGTGGCAGCCGGCGGGAAAAGCCAGCAGGCAGGTCCAAGTGCTCTGGTGTTCCAGGGCTGCAGATTCCTTCCGGACACATCCTACATCGATACATCAGCCGTGAAGAACGGGCTTAAGATATCGTATCTGGCAAGGCCATGGAGGCCATACGCAAAGACGGTGATCATAGAGTCGTATATCCATGAAATCTTCAATCTAAAGGGTTATATTCCGTTTACGGGATCCACCTTCGAGAATACTTGCACCGCTCTGGAGTACGGCAACGTAGGCCCAGCCAGTGATGTTTCGCAGAGGGTGAAATGGCCCGGTGTGAACCCAAATCTGCCGCAAAGCCAAGCCGCTCAATACTATCCCGGCAGATACTTCCAGCTCTCAAATAATGAAGGAGATGCGTGGATTGTTTCCTCCGGCGTCCCCTACGCCAGTGGCCCCATGCTCGCCTCCTCTTCCTAG 1728 0.5422 MVAAVAVGNGNSEKDSGTTDISTSQRNVDTLCLTAQYPETCKKSVESVAVSGNNTDMKTLVKAAFNATAEEITNQMRNSSLFQGLEKDPSTKDALAVCDEVFGYAVKNINDSIDKVDQFELSNLGQFAYDLKVWLSGAITMQHTCLDGFNNSTTEAGQTMARALKTALEMSNNALDIVEGFSSVVEDFNLGDALDDVENTADVRNKSRKLLSTASSSAEELAADDIPTWVGGHQRRLLQAGANGLKADAVVAQDGTGQFKTLTDALNTVPPTNSKPFVIYVKAGVYKEEVTVAANTMNFVIIVGDGATKTRFTGGKSQKDGVTTYHTSSFSVNANNFMAIDVGFENTAGPSAGPAVALRITGDKAVVYRCYMDGHQDTLYPSAYRQFYRDCMVWGTIDFIFGDAVTVFQNCTIMVKRGVDGQEGVVAAGGKSQQAGPSALVFQGCRFLPDTSYIDTSAVKNGLKISYLARPWRPYAKTVIIESYIHEIFNLKGYIPFTGSTFENTCTALEYGNVGPASDVSQRVKWPGVNPNLPQSQAAQYYPGRYFQLSNNEGDAWIVSSGVPYASGPMLASSS 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1456 575 ProSitePatterns Pectinesterase signature 1. 273 292 IPR018040 -
Lele17g1456 575 Pfam Plant invertase/pectin methylesterase inhibitor 28 177 IPR006501 GO:0004857
Lele17g1456 575 TIGRFAM PME_inhib: pectinesterase inhibitor domain 23 178 IPR006501 GO:0004857
Lele17g1456 575 SUPERFAMILY Pectin lyase-like 246 565 IPR011050 -
Lele17g1456 575 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 27 181 IPR035513 -
Lele17g1456 575 MobiDBLite consensus disorder prediction 1 22 - -
Lele17g1456 575 FunFam Pectinesterase 4 245 569 - -
Lele17g1456 575 Gene3D Invertase/pectin methylesterase inhibitor family protein 25 181 IPR035513 -
Lele17g1456 575 Pfam Pectinesterase 248 547 IPR000070 GO:0030599|GO:0042545
Lele17g1456 575 CDD PMEI-like_3 30 183 - -
Lele17g1456 575 ProSitePatterns Pectinesterase signature 2. 393 402 IPR033131 -
Lele17g1456 575 FunFam Pectinesterase 24 182 - -
Lele17g1456 575 SMART PMEI_2 23 177 IPR006501 GO:0004857
Lele17g1456 575 PANTHER PECTINESTERASE 18 558 - -
Lele17g1456 575 Gene3D - 245 570 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1456 Lele-ChrLele17 23307630 23309457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1456 1 565 Carbohydrate Esterase AT5G49180 38.394 1.58e-136 407