Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele17g1409 | ATGAATGAATCCGGAGAACTTTCTAGAGTCGCTCCTAAAGGCGACTCCATGTGTCCTCCCTCACTAATATCTATTTCGATTAGATCCGTCACCCCCTCTCCTCTCGCCTTATTTATACATCTCCCCAATCTGCCTCTTCCCTCCGAACTACGACTTCAATACACAATCAGAATGGGACTGTCCAACTTCCCCAGCGCAGCCGAGGGGCTGCTTCCGGTGCTGGTCATGAACACTGTAGTATCGGTGGCTCTGCTGAAGAACATCTTCAGGTCTCTTCTCCAAGTGGTTGGTGCGTCTTGGAAGCCGGACATGGGCGATGATGATGAGCAGAGCTGTGTGGCGAGGAGGAGGGTATCCATTACGCAGTACAAGTGCATGATGAGTGAGAGTGGTGGAACAAGGTCGGCCATGGCGGAGTGCTGCGTGTGTCTGTGTGGTTTCCGAGGCAGTGAAGAGGTGAGTGAGTTGTCCTGCAAGCATTTCTTCCACACCGCTTGCTTGGACAAGTGGTTCCTCAACAGACACCCCACCTGCCCTCTTTGTCGTTCCATTTCATAG | 558 | 0.5233 | MNESGELSRVAPKGDSMCPPSLISISIRSVTPSPLALFIHLPNLPLPSELRLQYTIRMGLSNFPSAAEGLLPVLVMNTVVSVALLKNIFRSLLQVVGASWKPDMGDDDEQSCVARRRVSITQYKCMMSESGGTRSAMAECCVCLCGFRGSEEVSELSCKHFFHTACLDKWFLNRHPTCPLCRSIS | 185 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele17g1409 | 185 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 116 | 185 | IPR013083 | - | |
| Lele17g1409 | 185 | SMART | ring_2 | 140 | 181 | IPR001841 | - | |
| Lele17g1409 | 185 | Pfam | Ring finger domain | 139 | 182 | IPR001841 | - | |
| Lele17g1409 | 185 | ProSiteProfiles | Zinc finger RING-type profile. | 140 | 182 | IPR001841 | - | |
| Lele17g1409 | 185 | SUPERFAMILY | RING/U-box | 139 | 184 | - | - | |
| Lele17g1409 | 185 | PANTHER | - | 58 | 183 | IPR044249 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele17g1409 | Lele-ChrLele17 | 23089667 | 23092003 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele17g1409 | 58 | 183 | C3H Transcription Factor Family | AT2G04240 | 33.557 | 4.00e-18 | 75.5 |