Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1399 ATGAAGAGACTTGGCAGCTCAGATTCCCTGGGTGCTCTCCTGCCCATCTGTCCATCCACAGAAGAACACAGTCCGAGGAACAACAATCGCGCGTACAGTAGTAGGGAGTTCCAATCCATGTTGGACGGGCTAGACGAAGAAGGATGCGTGGAAGAACTAGGCCACCCGACGGAGAAGAAACGGCGTCTGACGGTAGATCAAGTGAAGTCTTTAGAGAAGAACTTCGAAGTAGAAAACAAGCTAGAACCTGAGAGGAAGGTGAAGCTTGCCCAAGAACTGGGATTGCAGCCCAGGCAAGTGGCGGTGTGGTTCCAAAATCGTCGAGCCAGATGGAAAACCAAGCAATTAGAGAGAGACTACGGCGTCCTTAAAGCCAATTATGATACTCTCAAACATAACTACGATGCCCTCCAACAGGACAATGAAGCCTTGCTCAAAGAGATTAAGGAACTGAAATCTAGAATGCAAGATCAAGAGAAGAGTGAAGATGTGTCGTTGAATAATGGAGAGATAAAGCAGCCTAAGGCGGAGGAGAAAGTGATGGGAGTGGGTGTGGAACTTCCTGAAACGGCCATTCCGGGAGTGGAGTCCGACGACTTATATTACGACTGCTTCAACGGAAACGGCGTCGTAAGAGGTTGCTCACTCTTCCCAGCAGACTTTAACAAAGACGGCTCTTCCGACAGCGACTCCAGCGCAATCTTGAACGAAGATCCAAGCTCTTGTTCCTTTAAATTCAACAGTTCTTCATCGTTGTTTCAGTTCCAGAAAACGTGCCAGACTCAGACTCAGTATGTGAAGATGGAAGAGCACAACTTCTTCAGCACAGACGAGGCCTGCAACTTCTTCCCCGACGAACAGGCCCCAACCCTCCAGTGGTACTGGAGTTAA 891 0.4893 MKRLGSSDSLGALLPICPSTEEHSPRNNNRAYSSREFQSMLDGLDEEGCVEELGHPTEKKRRLTVDQVKSLEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDTLKHNYDALQQDNEALLKEIKELKSRMQDQEKSEDVSLNNGEIKQPKAEEKVMGVGVELPETAIPGVESDDLYYDCFNGNGVVRGCSLFPADFNKDGSSDSDSSAILNEDPSSCSFKFNSSSSLFQFQKTCQTQTQYVKMEEHNFFSTDEACNFFPDEQAPTLQWYWS 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1399 296 Gene3D - 63 108 - -
Lele17g1399 296 CDD homeodomain 59 115 IPR001356 GO:0003677
Lele17g1399 296 Pfam Homeodomain 59 112 IPR001356 GO:0003677
Lele17g1399 296 FunFam Homeobox-leucine zipper protein HAT5 52 116 - -
Lele17g1399 296 Pfam Homeobox associated leucine zipper 114 156 IPR003106 GO:0006355|GO:0043565
Lele17g1399 296 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 50 295 IPR045224 GO:0003700
Lele17g1399 296 Coils Coil 120 161 - -
Lele17g1399 296 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Lele17g1399 296 Gene3D - 109 169 - -
Lele17g1399 296 MobiDBLite consensus disorder prediction 1 29 - -
Lele17g1399 296 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Lele17g1399 296 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Lele17g1399 296 SUPERFAMILY Homeodomain-like 40 116 IPR009057 -
Lele17g1399 296 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Lele17g1399 296 SMART HOX_1 57 118 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1399 Lele-ChrLele17 23050097 23051311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1399 1 294 Homeobox Transcription Factor Family AT4G40060 48.387 4.25e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele17g1399 Homeodomain 2.5e-16 CL0123