Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1310 ATGCGGGAAAACTCAACTTCATCGGAAACTACCGCTACTCCCGTCCAGAACCGCCCCGTAGAGGACGGAGGTGGTAGTGGGCCTGTCTCCGATGGCCTCAAAGAGCAACGGGGGCTCGCCGACCAGGAAGTTGACCGGAATCCCGCCGGTCAGCGGTGGCCTCGAGAAGAGACATTGGCTTTGCTCAAAATAAGGTCTGAGATGGACATTGCTTTCAGGGATGTAAGCCCCAAAGGTCCTCTCTGGCAACAGGTTTCAAGGAGATTGGCGGAGCTAGGATACCATAGGAGTGCGAAGAAATGTAAAGAGAAGTTCGAAAACATTTACAAGTACCACAGAAGGACGAAGGAAGGGCGTTATGGCCGACCCAGCCGCAAGACTTATCGTTTCTTTGAGCAACTTGAAGCTCTCCTTCCGCCTCCAACTTCAACAGAAAAGGATACCCCACTGGATCTGGTTCAACATGCCATGCCCTGCTCTATTCGATTCCCTGGTGCAAATAGTAATTCCATCACTTCTTCTTCGAATGAAGAATCTGGGGAAGCTGAACCCAGAAAGAAGAGTAAACTAATCAAGTTTTTCCAGGGCTTGATGAGGGAAGTAATAGAGAAGCAAGAGATTCTACAAAAGAATTTTATGGAGCTGTTGGAAAAATGCGAGCAAGATCGAATAGCGAGGGAGGAAGCATGGAGGACGCAAGAATTAGATCGGTTTAACAGGGAGCGTGAGCTTTTTGCTGAAGAAAGATCTGCTGCTGTAGCCAAGGATGCCGCGTTGCTTGCCTTTCTGAAGAAGATGACAGAACAATCAGCATGCCCGGTGCAGCTGCCGGAGAATATTCCGGTTGATCGGAACCTGATTCCAGACGATATAGATAAGAACAAACAAGAAAAAGTCAACGGAGGTTGTACTGTTAGCGTTACGGATAAACAAGAATGTGGAAATGTTGGGAATTTCATACAGATGAGCTCCTCCCGTTGGCCTAAAGAAGAAGTGGAAGCTCTGATCAGATTGAGGACAGACCTGGAGATGGAATGTGAAGGAAATAATGGGCCTAATAAGGGACCCCTATGGGAAGAAATATCCTCAGCAATGAAGAAGCTTGGGCACAATCGCAGTGCCAAGAGATGCAAAGAGAAATGGGAGAACATAAACAAGTACTTTAAGAGGATGAAGCAGAAAAATAAGAGAAAGCCTGAGGATTCAAAGACATGCCCCTATTTTCACCAGCTAGATGAACTATACAGTAAGAAACCAAGGAAGGTCCAAGAATCAGCTGCTTCTTCTGAGAAGGAGTTGAAGGCGGAGGAGCTGTTAATGCACATTATGAGCGGTCAAGAAGAGCGTCAATCATCTGAAGATGCCGACAGGGAGAAGAAGGACCAGATTGAAGGAGATAAGGAAGATTTGGATCAGATGGTAGACAATAATACTTCAACAGCAATCATGGGATGA 1455 0.4667 MRENSTSSETTATPVQNRPVEDGGGSGPVSDGLKEQRGLADQEVDRNPAGQRWPREETLALLKIRSEMDIAFRDVSPKGPLWQQVSRRLAELGYHRSAKKCKEKFENIYKYHRRTKEGRYGRPSRKTYRFFEQLEALLPPPTSTEKDTPLDLVQHAMPCSIRFPGANSNSITSSSNEESGEAEPRKKSKLIKFFQGLMREVIEKQEILQKNFMELLEKCEQDRIAREEAWRTQELDRFNRERELFAEERSAAVAKDAALLAFLKKMTEQSACPVQLPENIPVDRNLIPDDIDKNKQEKVNGGCTVSVTDKQECGNVGNFIQMSSSRWPKEEVEALIRLRTDLEMECEGNNGPNKGPLWEEISSAMKKLGHNRSAKRCKEKWENINKYFKRMKQKNKRKPEDSKTCPYFHQLDELYSKKPRKVQESAASSEKELKAEELLMHIMSGQEERQSSEDADREKKDQIEGDKEDLDQMVDNNTSTAIMG 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1310 484 FunFam Trihelix transcription factor GT-2 53 114 - -
Lele17g1310 484 ProSiteProfiles Myb-like domain profile. 52 109 IPR001005 -
Lele17g1310 484 MobiDBLite consensus disorder prediction 36 55 - -
Lele17g1310 484 MobiDBLite consensus disorder prediction 416 473 - -
Lele17g1310 484 MobiDBLite consensus disorder prediction 1 55 - -
Lele17g1310 484 MobiDBLite consensus disorder prediction 164 178 - -
Lele17g1310 484 MobiDBLite consensus disorder prediction 164 185 - -
Lele17g1310 484 Gene3D - 327 390 - -
Lele17g1310 484 Gene3D - 53 114 - -
Lele17g1310 484 SUPERFAMILY Homeodomain-like 324 402 IPR009057 -
Lele17g1310 484 PANTHER FI21293P1 26 465 - -
Lele17g1310 484 MobiDBLite consensus disorder prediction 416 484 - -
Lele17g1310 484 CDD GT1 52 116 - -
Lele17g1310 484 FunFam Trihelix transcription factor GT-2 327 390 - -
Lele17g1310 484 MobiDBLite consensus disorder prediction 1 17 - -
Lele17g1310 484 ProSiteProfiles Myb-like domain profile. 325 385 IPR001005 -
Lele17g1310 484 CDD GT1 325 392 - -
Lele17g1310 484 Pfam Myb/SANT-like DNA-binding domain 325 414 IPR044822 -
Lele17g1310 484 Pfam Myb/SANT-like DNA-binding domain 51 137 IPR044822 -
Lele17g1310 484 SMART sant 323 387 IPR001005 -
Lele17g1310 484 SMART sant 49 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1310 Lele-ChrLele17 22518086 22519879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1310 322 417 Trihelix Transcription Factor Family AT1G76880 43.750 6.37e-16 78.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele17g1310 Myb_DNA-bind_4 3.2e-21 CL0123