Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1308 ATGTATGCTTCCCCTTCTTCCTCTGGCTCGCTGCTTCTCCAGGATCTTCTTGGGGATTTCCATTCCCGAAGGTTGCTCCTTCCACACAACCCACTTAACTCACAGGCCACCCCTCCAGCTTCCTTAAACACCCACAATGCCACAGACAAGTACCTCGGGAATGGCAATTTTGATGCCAATGTTGTTATGGTGCTCTCGGTGTTGTTGTGTGCTCTTATTTGCTCTCTGGGCTTGAACTCCATCATAAGGTGTGCCCTGAGGTGCTCCCATCTGGTGGTCAACATCGAGCCCGCTGGGACAAGCCCTCCGGCTCGATTGGCCAACACCGGAGTGAAGAAGAAAGCTCTCAAGACTTTCCCCACCGTAAACTACTCCGCCGACCTGAAGCTTCCAGGTTTGGACACGGAGTGCGTGATATGCTTGTCAGAGTTCGCCAATGGCGAAGGCGTCAGAATTTTGCCAAAGTGCAACCATGGCTTCCACGTGAAATGCATTGACAAGTGGCTGAGCTCACACTCGTCTTGTCCTAAGTGCAGACAGTGCCTAATTCAAACTTGCCAGAAGATTGTTGGATGCACCACGACTCAGGCTAGCTCGTCCCAGACACCTGAAACCATGATCAGGATCGCGCCTCTCGAACCAGAAGGTTTGGTCCACGACTACAGGGGAGCTGTGAGCACTTAA 684 0.5234 MYASPSSSGSLLLQDLLGDFHSRRLLLPHNPLNSQATPPASLNTHNATDKYLGNGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSHLVVNIEPAGTSPPARLANTGVKKKALKTFPTVNYSADLKLPGLDTECVICLSEFANGEGVRILPKCNHGFHVKCIDKWLSSHSSCPKCRQCLIQTCQKIVGCTTTQASSSQTPETMIRIAPLEPEGLVHDYRGAVST 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1308 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 102 184 IPR013083 -
Lele17g1308 227 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Lele17g1308 227 Pfam Ring finger domain 136 179 IPR001841 -
Lele17g1308 227 SUPERFAMILY RING/U-box 116 184 - -
Lele17g1308 227 PANTHER RING-H2 FINGER PROTEIN ATL78 15 217 IPR044602 GO:0016567|GO:0016740
Lele17g1308 227 CDD RING-H2_PA-TM-RING 136 179 - -
Lele17g1308 227 SMART ring_2 137 178 IPR001841 -
Lele17g1308 227 FunFam RING-H2 finger protein ATL73 99 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1308 Lele-ChrLele17 22511076 22511759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1308 24 183 C3H Transcription Factor Family AT3G10910 46.512 1.69e-40 135