Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1304 ATGGTGAGAGATGATCTGTGCGTCACAATTCCTAGCTTCTTTAGGTGCCCGATATCGCTCGATGTCATGAAATCCCCCGTCAGCCTCTGCACCGGAGTAACATACGATCGTTCCAGTATCCAGCGCTGGCTCGACGACGGCAACAACACCTGCCCTGCCACCATGCAGGTACTCCAATCCAAGGAATTTGTCCCTAACCTTACTCTCCAGAGGCTTATCCAGATCTGGACTGACTCCGTTCGACACCGAATCGAATCTGCCGACTCCCCGGCTGCCAAATCGGTCCCGTCCCCAGACCAACTCGTCGCCACTGTCCGAGATTTGGAGGGCAAGAGCGGGAACCCTTCGTGCTCCCTCTCTGGAATTCTATCCTTTGCCGGAGAATCCGAAGAGAACCGGGAATTCCTAGCCAACATAGAGGGATTAGTGCCTTTGCTCGTTGGTTACCTCGACAATGTCGATGGCGGAATTGCTCGGAGCGTTGAATTTCTTGAGAAAGTTGTCAAGGCTTTGGATTTGGTCCTGAATAAAGCAAAAGACGATGAGACATTGAAGCATTCGATTGTGAAGAGCCAGGAAGGCAATTGTTTAGCTTCTCTACTTCTTGTTCTTCAACGAGGCAGCTCTGATTCGAAAATTGCGTCGGCTAAGGTTTTGAAATTCGCCGCTGCGGACGTTGAATCGAAAATCTTGATCGCTGAGAAGGAAGGCCTAATTCATGAATTGCTTAAAATGACATCAGACAAAGATGCGATGCTAATCGAGAACGGCTTATCCTGCCTGGTGGCAATCTCAACGCCGAAACGAAACAAGGCGAAATTGATCCATCTCGGAGCTGTGAAGAAATTATCGGAATTGCTTTCGGAGTCGAAGTGGAGCGTTTCCATCACCGAGAATGTACTGAATCTGCTGGAAACGGTGTCGACGACCAAGGAAGGAAGGTTGTTGATTTGCGAGGACCCAAATTGCGTGGCGTCGATATTGCAGAAGGTCATGAAAGTGTCAAATGTCGCAACGGAGCACGCAGTGACTATACTTTGGAGCGTGTGTTATCTATTTCGTCATCAGAAGGCGCAGGAAGTGGTGACGAAGGCGAACGGTTTGACCAAGATTCTGCTTCTGATGCAGAGCAATTGTTCTCCGGGAGTTCGTCAAATGTGCGCCGATTTGCTCAAGATTTTCCGGGTTAACTCCAAATCATGCCTCTCGTGCTACCAGACCAAGGCCACCCACCTCATGCCCTTTTGA 1248 0.4968 MVRDDLCVTIPSFFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDDGNNTCPATMQVLQSKEFVPNLTLQRLIQIWTDSVRHRIESADSPAAKSVPSPDQLVATVRDLEGKSGNPSCSLSGILSFAGESEENREFLANIEGLVPLLVGYLDNVDGGIARSVEFLEKVVKALDLVLNKAKDDETLKHSIVKSQEGNCLASLLLVLQRGSSDSKIASAKVLKFAAADVESKILIAEKEGLIHELLKMTSDKDAMLIENGLSCLVAISTPKRNKAKLIHLGAVKKLSELLSESKWSVSITENVLNLLETVSTTKEGRLLICEDPNCVASILQKVMKVSNVATEHAVTILWSVCYLFRHQKAQEVVTKANGLTKILLLMQSNCSPGVRQMCADLLKIFRVNSKSCLSCYQTKATHLMPF 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1304 415 Gene3D - 78 404 IPR011989 -
Lele17g1304 415 Coils Coil 161 181 - -
Lele17g1304 415 SMART Ubox_2 13 76 IPR003613 GO:0004842|GO:0016567
Lele17g1304 415 SUPERFAMILY RING/U-box 6 79 - -
Lele17g1304 415 ProSiteProfiles U-box domain profile. 9 83 IPR003613 GO:0004842|GO:0016567
Lele17g1304 415 SUPERFAMILY ARM repeat 168 402 IPR016024 -
Lele17g1304 415 Pfam U-box domain 10 78 IPR003613 GO:0004842|GO:0016567
Lele17g1304 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 77 IPR013083 -
Lele17g1304 415 PANTHER WDSAM1 PROTEIN 9 403 IPR045185 GO:0061630
Lele17g1304 415 FunFam RING-type E3 ubiquitin transferase 2 82 - -
Lele17g1304 415 CDD RING-Ubox_PUB 14 56 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1304 Lele-ChrLele17 22473718 22474965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1304 1 415 U-box Gene Family AT5G64660 52.113 8.21e-139 401