Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1303 ATGCTTAAACCCGATGAAGCAGGTACTGAAATATTCTTCGACTCAGCAGATTTTCTGCCACCTCAACACTCTGTTCTAGACGAAGACTTGGGTAGTGACAAGCTTGGCTATGAAATTTGGGTGAACAAGCCTCAAAGTGTGAAGGAAAGACGGCAACGTTTTATCCAAGAAATGGGTTTTGCCGATTCTTCTTTAGACGTTTGCCCTCAAGAGGTCAACGCCCTGGAACTTGAAAGGATAATGGAGAGCGAAGGCGCAGTATCAAGTTTCTTCAGTTCCTCTCCCGAAGCAAACGTCTTGTTTGATGAACATAAAAGGAAGGCGTGTGAGTCATCTTCTTCAGGTGAAGAGCACAGACCCAGAGAAGCTGAGGCATCAGAAGAATGTCAATTTGGTCCCTTCGATATGGGCAAAAAGAAAATGAAGGGCTGGTGGAAGCTCTTTGCGAAGAGCAGAAGAACAATTGGAGGGAAAATGCGATCAAAATTGAATAGATCAGAGATGAGCAAAACTCGCAGAATAAATGTAAAGCAGAACAAAAAGAGGTGGATGGAATTGAGTGCCTTGTACTTAGGACAAGAGATTAGAGCTCATGAAGGCTTAATCTGGACTATGAAGTTTAGTCCTAATGGCCAGTATGTAGCAAGTGGTGGTGAAGATGGTGTAGTTCGAGTATGGCGTGTTATATCAATGGATACATCCAGCATTTGCTTCACTGAAGAAGACACTACCTCTACTAGCAAAGTGAAACAAGAAATCTCTTGTTCATGGAGGAAAAAGTCAAATATATCCTTCGTGGCTCTTCCAAACAAGGTCCTTCGGATTGAGGGATCACCACTGCAAGAATTCTTTGGTCATACCAATGATGTCTTGGATTTGGCTTGGTCTGATTCAAATATTCTGTTGTCGTCTTCAATGGACAAAACGGTTCGCTTGTGGCAAATTGGCTGTGATCAATGCATGGGTGTCTTCCGTCACAATGACTATGTGACTTGCATCCAAGCCAACCCAGTTGATAAAAACTACTTCATCAGTGGGTCTATAGATGGCAAAGTCCGAATATGGGGGTTAAGTGAAGAGTGCGTCGTTGATTGGGCAGATGTACGAGATGTGATTACGGCTGTAAGTTACCAGCCAGATGGGAAGGGGTTTGTAGTTGGATCCATCACAGGCGCTTGTCGTTTTTATGTTGCTTCAGGCAAACATTTCCAGCTTGAGGCAGAGATATGGGTTCATGGGAAGAAGAGATCAGCTGGCAACAAGATTACTGGCATTCAGTTTTCACAGAAAAAGCACCAGAGAGTTATGATCACATCGGAAGATTCTAAAATTCGTGTGCTTGATGGCTTTGAACTTGTCCAGAAATTTAGAGGCATTCCAAAGTCAGGAAGCCAGATATGTGGCTCATTTACATCAACCGAAAATCATATAATTTCTGTTGGGGAGGACTCCAATGTGTACGTTTGGAATTGCAATGACTTGGAAAATTCATCATCCAAACCCATAAAATCTGAACGTTGCTGTGAGTACTTTTCCACTGAAGGTGTTACCGTGGCAATACCCTGGTTGGTAAATAGCACAGAACAAACAAGCTTATGTGGCAGTGATTCACTGCAAGAGGCTCGTCCTAGTGTTAGAGATTCAGAGCGTTTCTCTCTCGGTAACTGGTTCTCCATGGAAGGGACATGCCGGGGTTCGGTGACGTGGCCGGAAGAGAAACTTCCGAGCTGGAATTTACCATTTGCGGAAGATGAATATGATCCATTAGAGCTGTGGCATGAAAGAGGTGGATCAGAAACATGGGGACTATCCTTTGTGGTGGCTGGTTTGGATGGAACTATCAAGACATTCCATAACTTTGGATTGCCTGTTAGGCTTTAG 1881 0.437 MLKPDEAGTEIFFDSADFLPPQHSVLDEDLGSDKLGYEIWVNKPQSVKERRQRFIQEMGFADSSLDVCPQEVNALELERIMESEGAVSSFFSSSPEANVLFDEHKRKACESSSSGEEHRPREAEASEECQFGPFDMGKKKMKGWWKLFAKSRRTIGGKMRSKLNRSEMSKTRRINVKQNKKRWMELSALYLGQEIRAHEGLIWTMKFSPNGQYVASGGEDGVVRVWRVISMDTSSICFTEEDTTSTSKVKQEISCSWRKKSNISFVALPNKVLRIEGSPLQEFFGHTNDVLDLAWSDSNILLSSSMDKTVRLWQIGCDQCMGVFRHNDYVTCIQANPVDKNYFISGSIDGKVRIWGLSEECVVDWADVRDVITAVSYQPDGKGFVVGSITGACRFYVASGKHFQLEAEIWVHGKKRSAGNKITGIQFSQKKHQRVMITSEDSKIRVLDGFELVQKFRGIPKSGSQICGSFTSTENHIISVGEDSNVYVWNCNDLENSSSKPIKSERCCEYFSTEGVTVAIPWLVNSTEQTSLCGSDSLQEARPSVRDSERFSLGNWFSMEGTCRGSVTWPEEKLPSWNLPFAEDEYDPLELWHERGGSETWGLSFVVAGLDGTIKTFHNFGLPVRL 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1303 626 SUPERFAMILY WD40 repeat-like 190 493 IPR036322 GO:0005515
Lele17g1303 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 195 236 IPR001680 GO:0005515
Lele17g1303 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 323 358 IPR001680 GO:0005515
Lele17g1303 626 PANTHER WD REPEAT DOMAIN 44 131 623 IPR040324 -
Lele17g1303 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 323 358 - -
Lele17g1303 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 195 228 - -
Lele17g1303 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 283 315 IPR001680 GO:0005515
Lele17g1303 626 SMART WD40_4 402 448 IPR001680 GO:0005515
Lele17g1303 626 SMART WD40_4 358 397 IPR001680 GO:0005515
Lele17g1303 626 SMART WD40_4 276 314 IPR001680 GO:0005515
Lele17g1303 626 SMART WD40_4 449 490 IPR001680 GO:0005515
Lele17g1303 626 SMART WD40_4 188 227 IPR001680 GO:0005515
Lele17g1303 626 SMART WD40_4 317 356 IPR001680 GO:0005515
Lele17g1303 626 PRINTS G protein beta WD-40 repeat signature 343 357 IPR020472 -
Lele17g1303 626 PRINTS G protein beta WD-40 repeat signature 301 315 IPR020472 -
Lele17g1303 626 PRINTS G protein beta WD-40 repeat signature 214 228 IPR020472 -
Lele17g1303 626 Gene3D - 181 518 IPR015943 GO:0005515
Lele17g1303 626 Pfam WD domain, G-beta repeat 194 226 IPR001680 GO:0005515
Lele17g1303 626 Pfam WD domain, G-beta repeat 319 355 IPR001680 GO:0005515
Lele17g1303 626 Pfam WD domain, G-beta repeat 277 313 IPR001680 GO:0005515
Lele17g1303 626 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 283 315 - -
Lele17g1303 626 MobiDBLite consensus disorder prediction 110 129 - -
Lele17g1303 626 FunFam WD repeat-containing protein 44 179 522 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1303 Lele-ChrLele17 22458653 22461132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1303 274 390 U-box Gene Family AT2G33340 31.200 2.74e-07 51.6