Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1296 ATGAGTGGAAGTAGCAGAAGGCGTTCCTCAAAGTGGGATTTAAGGGATGAACCTGAGTTTGTACCTGACAGTAAGCAATTGCGATCTGGGTGGTCCTCTGCCAATGTTACTGGTAGCAATAGTTCAAAATGGTCTTATTTAGATGGGAATGAGAAGCTAAAACCTAATATGCGATTACCATTCAAGGAACCTTTTTCTGGAGGCAGAGTTTCTAATAAGGATGATATCATGAATAAAGACTATAATAGAGATTTGGATACCAAAATGGCATGGGACGCAGATGAAAGCTATGGAATGAAAATGTCTCCAGGGTTGGAGGAATGGAAACGTAAGAGGCACAGTCGTTCCCCAAAAAATGGTTTGGACAGGAGTAGAAGCCGAAGCCGGAGCCCTGCCCATGGTTTTAGGTGGGAATCAGGAGTCAATGACAGAAATAGAATGAGAGCTGGAGGATTGCCACAACCATGTAGAGATTTTGCTGTTGGAAAATGCAGAAGAGGTAGCCGTTGCCATTTTCTTCATCATGACGATCGAAATTATGAGGATGGCTGGGACAGTAGAAACAGGAAAGATGGACCTCCCAGATATTCTGCTCCCTATGAAAGCAGGGATTATTCTACTAGGAGTGGAAGATCAAATGAGACTTGTATCAATTTTGCACAAGGCAAATGTAGAATGGGAGCATCTTGCAAATACGTGCATCATAGCAATTCTGATGATATGAGCAAAGGAAATGTAGATGATTCACCTAGCCGGGAGAGTTCTTTCGAGCGTGGTGGTGGGCATGAGCCAAACCGCTTTAGTGATACTCCCTGCAAATTTTATGCTGCAGGAAATTGTCGCAATGGTAAATATTGCAGGTTTTCTCATGATATTCAGACATCTAGGAGCCCAAATAGAAGATTAAGAGATGACAGGTGGGGGAACAATCCAGGCGGAGATCGGGCATTGGATAGACCAAGAGGGAGTAACTCAGTTAGTCCTAGTAGAAGGCAAAGAGATGATAGATGGGGTCCAGATGGCAACATGGTTGACATGGATAAAATGTGGGATGGTCCAAAACTGAATGATGTTGCTGTCTCGGATACAGCAAAGCTGAGTGAAGATAAGAGTGGAAATATGGGTATACCAGAACCTGGATTTACTACTTGGCCCAGGATTGATGGATGGGGCGATAATTTAGATAACAACAAAGTGTATGCTGAGCCAACATTTGTGGGTGACAAGAAGAAAGCAGAGCAATGGAAGACAGAAAATGCTGGTGCTACCATGGGTGCTCCCCAATCAATTGGGCCTGACAAACGGCTTGTTGATGCAGAAATGTCTCCTGATTGGAATTATGGGATTGGATCTTCTGGGCATATTGAAGACAATAGTGGGCAGAATAAACATGGTTTGACTCAGGGTGGTGCATATTTAGCCACCTCCGAACATCACAGATTACAAGTTGCTCCAGGACAAGGTTTCAATCAGAACTCACAGCATGCAAATGCTTTGCCTCCTTCTAGCTGTAATGTGGTTGGACAAAGTCAAGGGGCAGTCCCTGTTGTTCCTCCACTTGGAGGGATAGCTGAAGCTATACAGAACCAAGCATCTTCTGCAAAAAAGTACAGTGTTGAGCCAAATATCATGGATGCAAGCTTATCGCATGTTAGTACAATAAATACTCCAACGCAAAACATGGTGAGCAATGAACAGCTTTCTCAACTTAGCAGCCTCTCAGCCTCTCTGGTTCATTTCCTGGGAACAGGTCAGCAACTTCCACAAATTTATGCTGCTCTAAATTCTCATGATGTGAAGGACACATCCTCCCTAGCCAAAACTGAAGTGTCTGGGGAGCCTGTTTCCAGTGCATACATCAAGCCAGATCCTGCTATTGGATCCCAGAAGCAGTATGATCCAATGAGTGATAGTATGGAGCCAAAGAAGATTGATGCAGGTGGAATTACGCCACCCTTTTCTCCTAGTAAAACAATTGCTGATAGTTCAGTGAGACAAAATCTTGGTGATTCTTGTAAGACTTCAGAAGAACAAATTGTCAAGAGTGAAAATTTGAACCCTTTGCAGTCAGATCAAAAAGTTGAAGCTAATAAGGGAAACAATGAAGTGGCAGCTGAGGAAAGGCGACATTCTCGAGCAGATGATAGAAATGCAAAAGATAACGGTCCTTCAGAAAATATGGACCAAAATGGGCCTGATGAGACGAAGAAAATGAAGGATGTGAAGGGGATTCGTGCTTTTAAATTTGCTCTGGTTGAGTTTGTTAAAGAGCTTCTGAAACCAACATGGAAAGAAGGTCATATCAACAAAGAACATTATAAAACAATTGTGAAGAAAGTTGTTGATAAAGTAACTGGTACTGTGCAGGGGGCTCATATCCCTCAGACACAAGAAAAAATTGATCACTATTTGTCAGTTTCGAAACCAAAGCTTAACAAACTTATACAGGCATATGTTGAAAAGGTTCAGAAGGCTTAG 2478 0.4266 MSGSSRRRSSKWDLRDEPEFVPDSKQLRSGWSSANVTGSNSSKWSYLDGNEKLKPNMRLPFKEPFSGGRVSNKDDIMNKDYNRDLDTKMAWDADESYGMKMSPGLEEWKRKRHSRSPKNGLDRSRSRSRSPAHGFRWESGVNDRNRMRAGGLPQPCRDFAVGKCRRGSRCHFLHHDDRNYEDGWDSRNRKDGPPRYSAPYESRDYSTRSGRSNETCINFAQGKCRMGASCKYVHHSNSDDMSKGNVDDSPSRESSFERGGGHEPNRFSDTPCKFYAAGNCRNGKYCRFSHDIQTSRSPNRRLRDDRWGNNPGGDRALDRPRGSNSVSPSRRQRDDRWGPDGNMVDMDKMWDGPKLNDVAVSDTAKLSEDKSGNMGIPEPGFTTWPRIDGWGDNLDNNKVYAEPTFVGDKKKAEQWKTENAGATMGAPQSIGPDKRLVDAEMSPDWNYGIGSSGHIEDNSGQNKHGLTQGGAYLATSEHHRLQVAPGQGFNQNSQHANALPPSSCNVVGQSQGAVPVVPPLGGIAEAIQNQASSAKKYSVEPNIMDASLSHVSTINTPTQNMVSNEQLSQLSSLSASLVHFLGTGQQLPQIYAALNSHDVKDTSSLAKTEVSGEPVSSAYIKPDPAIGSQKQYDPMSDSMEPKKIDAGGITPPFSPSKTIADSSVRQNLGDSCKTSEEQIVKSENLNPLQSDQKVEANKGNNEVAAEERRHSRADDRNAKDNGPSENMDQNGPDETKKMKDVKGIRAFKFALVEFVKELLKPTWKEGHINKEHYKTIVKKVVDKVTGTVQGAHIPQTQEKIDHYLSVSKPKLNKLIQAYVEKVQKA 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1296 825 MobiDBLite consensus disorder prediction 236 264 - -
Lele17g1296 825 ProSiteProfiles Zinc finger C3H1-type profile. 150 177 IPR000571 GO:0046872
Lele17g1296 825 Pfam CCCH-type zinc finger 271 291 IPR041367 -
Lele17g1296 825 MobiDBLite consensus disorder prediction 605 739 - -
Lele17g1296 825 Pfam RNA-binding, Nab2-type zinc finger 216 234 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 294 312 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 8 23 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 26 47 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 1 78 - -
Lele17g1296 825 Gene3D - 153 239 - -
Lele17g1296 825 Gene3D - 265 336 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 236 268 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 181 211 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 106 151 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 181 197 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 106 132 - -
Lele17g1296 825 SUPERFAMILY CCCH zinc finger 269 291 IPR036855 GO:0046872
Lele17g1296 825 SMART c3hfinal6 266 292 IPR000571 GO:0046872
Lele17g1296 825 SMART c3hfinal6 211 236 IPR000571 GO:0046872
Lele17g1296 825 SMART c3hfinal6 152 176 IPR000571 GO:0046872
Lele17g1296 825 ProSiteProfiles Zinc finger C3H1-type profile. 266 293 IPR000571 GO:0046872
Lele17g1296 825 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 824 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 655 697 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 328 342 - -
Lele17g1296 825 MobiDBLite consensus disorder prediction 294 351 - -
Lele17g1296 825 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 155 175 IPR000571 GO:0046872
Lele17g1296 825 MobiDBLite consensus disorder prediction 700 722 - -
Lele17g1296 825 ProSiteProfiles Zinc finger C3H1-type profile. 210 237 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1296 Lele-ChrLele17 22425857 22430083 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele17g1296 zf-CCCH 0.00027 CL0537