Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1295 ATGGATGTCAACCAAAACCCTACCATGTTCACAAGCCTTAACCACACCACTTGGAATCTGGACAATAATATGGAAATGGATCACAGCAATATCCATCATCATCATCATCAAATCCCCATGTGTTCTTCTTGGCCTAACTCCCCTAATTACCCTCATCAGATAATACCATCTTCTTCGGTGTCCACCACAAATATACCCTCTTCAGGGTTTCTAAACAACGTCGTGTTGGAAGAAGAAGACGAAGAAAGAGGAGAAGAAGAAGAGGAAGAGCTGGGATCAGTGAAGGAGATGCTGTACAAGATCGCTGCTATGCAGCCGGTGGACATAGACCCAGCCACCATCCGAAAGCCAAAGAGGAGAAACGTCCGAATCAGCGACGATCCACAAAGCGTAGCCGCGAGACACCGGAGAGAGAGGATCAGCGAGAAAATCCGAATCCTACAAAGACTCGTCCCCGGTGGCACCAAGATGGACACTGCCTCCATGCTCGACGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCAGGTTGCTCCAATCTCAACCCTCACCCTCACAACCACCACAATGCATCACTAACACTACTACTCTTTCCAATATTGGGCTTAACAATACCGACCATTGGCCTTTTGCACCACCGTCTCTACTACACTGTCCCATCACCAACTCCTCCTCCGCCACCGCCACCGCCACCTCCATGGGCATGCCTGTCAGACTGGGACTTGGCTCTGGCTATAATCACGAGTCTGATATATATGATGTTAAGATTGGAATCATTTCTATGCCGGTTTCCAGATCAGATGTCATAACTCCTAAGAATTTGAAAATCTCGTACTTTGATTGCACTACTTTCTACTTCAAATTCAACGTGCAAACCGCCACGGATTTCCCAAGCAAGGTCTCTTTAATCATGAAGGATCACAAGGAAGTTGTGACGTTCCGGGTCCATGTTCCGGCTTACTACCCCTCGTACAATGCGCCATACTGTCCTTTCGTAGAACAAGGATTCAATTGCTTGGCTAATGGACGGAGCGACGATGATTATCTTCATTGGAGGTGGAAACCAAGGAATTGTGATGTTCCATTGTTTGACCTCCGTAGTTTTTTGGAGATGTTTCGAAGCAAAAGAATTGTTTTTGTCAGGCGATTCAATGAGTAG 1164 0.4656 MDVNQNPTMFTSLNHTTWNLDNNMEMDHSNIHHHHHQIPMCSSWPNSPNYPHQIIPSSSVSTTNIPSSGFLNNVVLEEEDEERGEEEEEELGSVKEMLYKIAAMQPVDIDPATIRKPKRRNVRISDDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSQPSPSQPPQCITNTTTLSNIGLNNTDHWPFAPPSLLHCPITNSSSATATATSMGMPVRLGLGSGYNHESDIYDVKIGIISMPVSRSDVITPKNLKISYFDCTTFYFKFNVQTATDFPSKVSLIMKDHKEVVTFRVHVPAYYPSYNAPYCPFVEQGFNCLANGRSDDDYLHWRWKPRNCDVPLFDLRSFLEMFRSKRIVFVRRFNE 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1295 387 Coils Coil 163 183 - -
Lele17g1295 387 Pfam PMR5 N terminal Domain 322 361 IPR025846 -
Lele17g1295 387 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 124 173 IPR011598 GO:0046983
Lele17g1295 387 FunFam BHLH transcription factor 127 189 - -
Lele17g1295 387 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 230 IPR045843 GO:0003700|GO:0006355
Lele17g1295 387 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 130 186 IPR036638 GO:0046983
Lele17g1295 387 CDD bHLH_AtIND_like 125 180 - -
Lele17g1295 387 Pfam Helix-loop-helix DNA-binding domain 134 173 IPR011598 GO:0046983
Lele17g1295 387 Gene3D - 127 188 IPR036638 GO:0046983
Lele17g1295 387 SMART finulus 130 179 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1295 Lele-ChrLele17 22412697 22415695 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1295 91 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 85.000 1.08e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele17g1295 PMR5N 1.4e-14 No_clan