Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1279 ATGTCGCTTTCGCAAAGGCAAAAAGATCACTTGGTAGGCAAATCAAGAATGGTAATTAGAATGTCCAGAAGCAGTGGCAATGAAAGTAAGAGTTGTAACAGAGGCCATTGGAGACCAGCTGAAGATGAGACACTGAAACATCTTGTGGAGCAGTACGGTCCCCATAACTGGAATTTCATTGCAGAACATCTTGATGGCAGATCAGGCAAAAGTTGTAGATTGAGGTGGTACAACCAACTAGACCCAAACATAGTGAAAAGGCCATTCACAGAGGAGGAGGAAGAAATACTTCTAGCTCTTCACAAGGTAAAGGGAAACAAGTGGGCTGCAATTTCAAGGTTCTTGCCTGGAAGAACTGATAATGCTGTCAAGAATCACTTCCATGTCCTTATGGCAAGAAGAAAGAGAGAACGTTACACACTTTTTGGTGACAGAGGCAGTAATCATAATCATAATCATATTCCTATGCATAGGCCTACCTCAGGGATAGTTAATAACTTCACCTTCCAAAACAACAGAAACTACTTGGGACTGAATCCTTGGAATACTCGAAGTGATACTTCTTCGACCATCTCATCAGAGTTACTGAGTTTTGAAGCTTCTGGTGGTGCTTCTTGTTCGCTTGGCAGTTACAGTAGTTTTACTGCCCCAGGAATTCCAAGTATTGGGAAGGTGGTTCCTCTTCTTTCCCAGAGGTTCTCAAAATCCTATTTTGCCCAAAGAACTGAGGATTATTCTTCCATGAAAGGCATGACAGACAAGATTACTCTGGAAGAACAAGTTGAAAAGCTTAAGGATGTTTCCTTTATAGACTTTCTTGGAGTGGGAAGTTGTTCTGCCAGCGACAGTTGA 852 0.4202 MSLSQRQKDHLVGKSRMVIRMSRSSGNESKSCNRGHWRPAEDETLKHLVEQYGPHNWNFIAEHLDGRSGKSCRLRWYNQLDPNIVKRPFTEEEEEILLALHKVKGNKWAAISRFLPGRTDNAVKNHFHVLMARRKRERYTLFGDRGSNHNHNHIPMHRPTSGIVNNFTFQNNRNYLGLNPWNTRSDTSSTISSELLSFEASGGASCSLGSYSSFTAPGIPSIGKVVPLLSQRFSKSYFAQRTEDYSSMKGMTDKITLEEQVEKLKDVSFIDFLGVGSCSASDS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1279 283 SUPERFAMILY Homeodomain-like 33 127 IPR009057 -
Lele17g1279 283 ProSiteProfiles Myb-like domain profile. 81 131 IPR001005 -
Lele17g1279 283 CDD SANT 37 78 IPR001005 -
Lele17g1279 283 Gene3D - 34 85 - -
Lele17g1279 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 84 IPR017930 -
Lele17g1279 283 PANTHER MYB PROTEIN-RELATED 34 182 - -
Lele17g1279 283 SMART sant 85 133 IPR001005 -
Lele17g1279 283 SMART sant 33 82 IPR001005 -
Lele17g1279 283 Gene3D - 88 156 - -
Lele17g1279 283 ProSiteProfiles Myb-like domain profile. 29 80 IPR001005 -
Lele17g1279 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 85 135 IPR017930 -
Lele17g1279 283 CDD SANT 96 131 IPR001005 -
Lele17g1279 283 FunFam MYB transcription factor 34 85 - -
Lele17g1279 283 Pfam Myb-like DNA-binding domain 86 130 IPR001005 -
Lele17g1279 283 Pfam Myb-like DNA-binding domain 34 80 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1279 Lele-ChrLele17 22339102 22342467 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1279 20 279 MYB Transcription Factor Family AT4G33450 47.445 3.20e-70 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele17g1279 Myb_DNA-binding 4.4e-15 CL0123