Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1273 ATGACGATTCCTCACTTGTTCAGATGCCCAATCAGTCTCGACTTGTTTGAGGATCCTGTAACGTTATGCACGGGCCAAACCTACGATAGGTCGAGCATAGAAAGATGGCTTGCTCAAGGTAATCTCACTTGCCCTGTTACAATGCAGAAGCTTCATGATCTATCCATCGTCCCCAATCACACTCTTCGTCATTTGATCCATCACTGGCTTCAATTCTACCCTCAATTTGACCACTTTGGTAACTCTAAAACCATCGATTCTCTTGCCTCCCTGAAACGCACCCTTCAATCTCAGGATTCCACCTTCCAGAACAAACTCCAAGCACTTGAAAAGATCAGGCTTTTATCCGATGAATATTGCTCTTTCAAGAAATCTTGCTTCCTCCAACTGGGTTTCTTGCCTCTTCTTTTGGGACTTGTTTTTGGAGCTCAAATATCCAAAGAGAACCATCATCGCAACATGGAGTTCATAGAGCTAGCTCTTTCTTGCATTTTAAAGTTGGTACCTCTTGACAATACCGCAGAGCCTCTAAATATTCTCAAAGAAGAACCTAAACTAGAATCGTATCTTGTATTATTCGAAAAGGGAAGTCCCAATATTAAAACCAGTCTGTGTAATCTGATAGATTCAGCTGCTACAGCACATTTAGAAGAGGTTTTGGTTATACTTGGAAACTCCCAGAAACTACTCAGTGAAATTGTTCATTTTGCAAGCCAAAATAACTGTGAGGCTTCAAGGGCTGCAATTAAAGCCATATCAGCGTTATGTTCATTACAATCAAATAGAGAGAATCTGGTAAAAGCAGGGGCGATTGATGGAATCATGAGGTACATTTCAGGGTGTGAAGCGAGAGAGAAGAACTTGGCTCCTTTGGGGATGGAGATAATAGAGAAGCTTCTGGTAATAGAGACAGGCAAAGAAGCATTAGTGAATAGTCCAAATGGGATTCAAAGTTTGGTGAAGATGGTGTTCAGAGTGAGTAATCAAGAGTGTAGTGAGAATGCTGTGGGGCTTCTGATAATGGTGTGCGAAGAAAGTGGGCGAGCCAGAGAAGAAGCCTTTGAAGGAGGAGTTTTAACTCAGTTGCTTTTGCTTCTGCAGAGCCAATGTAGTGCTAAGACGAAGACGAAGGCAAGAATGCTTCTGAAATTGCTAAGATCCAAGTGGGCTGAGAAAGTACCAAAAGAGGCCTAA 1194 0.4221 MTIPHLFRCPISLDLFEDPVTLCTGQTYDRSSIERWLAQGNLTCPVTMQKLHDLSIVPNHTLRHLIHHWLQFYPQFDHFGNSKTIDSLASLKRTLQSQDSTFQNKLQALEKIRLLSDEYCSFKKSCFLQLGFLPLLLGLVFGAQISKENHHRNMEFIELALSCILKLVPLDNTAEPLNILKEEPKLESYLVLFEKGSPNIKTSLCNLIDSAATAHLEEVLVILGNSQKLLSEIVHFASQNNCEASRAAIKAISALCSLQSNRENLVKAGAIDGIMRYISGCEAREKNLAPLGMEIIEKLLVIETGKEALVNSPNGIQSLVKMVFRVSNQECSENAVGLLIMVCEESGRAREEAFEGGVLTQLLLLLQSQCSAKTKTKARMLLKLLRSKWAEKVPKEA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1273 397 ProSiteProfiles U-box domain profile. 2 76 IPR003613 GO:0004842|GO:0016567
Lele17g1273 397 FunFam RING-type E3 ubiquitin transferase 3 73 - -
Lele17g1273 397 CDD RING-Ubox_PUB 7 49 IPR045210 -
Lele17g1273 397 SUPERFAMILY RING/U-box 2 71 - -
Lele17g1273 397 SMART Ubox_2 6 69 IPR003613 GO:0004842|GO:0016567
Lele17g1273 397 Pfam U-box domain 3 71 IPR003613 GO:0004842|GO:0016567
Lele17g1273 397 Gene3D - 77 397 IPR011989 -
Lele17g1273 397 SUPERFAMILY ARM repeat 91 372 IPR016024 -
Lele17g1273 397 PANTHER WDSAM1 PROTEIN 2 391 IPR045185 GO:0061630
Lele17g1273 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 73 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1273 Lele-ChrLele17 22317101 22318294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1273 3 391 U-box Gene Family AT1G49780 32.353 2.88e-45 159