Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1267 ATGGAAGATGAGAGCTACAACAATTTGCCAAATGGGGTCATTTCAGAAAGCCCTGAAAGTCCCACCTTAAAGACATCAAGCACCAACAACAACAACGTTAACAACAATAAAGAACAGGATCGCTTTCTCCCCATAGCCAATGTGGGAAGAATCATGAAGAAAGTGATGCCTCCGAATGGGAAAATCTCAAAGGACGCTAAAGAGACAGTTCAAGAATGTGTATCTGAGTTCATCAGCTTCGTCACTGGGGAAGCATCTGATAAATGCCAGAGAGAGAAGAGGAAGACCATCAATGGAGATGATATTATATGGGCAATCACAACCCTAGGGTTTGATGATTACGTTGACCCTTTAAAATGTTACCTTCAGAAGTATAGAGACATAGAAGGAGAGAAGCTTAATATTCCAAAACACCAACGTTCTGAACAAAGGCTTCATCACCACCACAATCACCAAGACCAGACTAATAATATTAATAATAATAACAATTTACCTTTAAGTAGTGTATATTCTTCCACAAATCTAATTTCTCAGCCTCCCTATGTGCCTGGTGGCCAGCCATATACTCTACCTTTCTCCCCAAATTCTATCAAACAGGACCAGATTGATTCAGTGGGACACTGGGTGAAAGTGGGTCATCTTCTTCTTCTTCCGGTTGCTGATGAAGAGAACAAAGAGCATGCATATGCTTTAGCTCCTAAGATCTGTTCATAA 714 0.4062 MEDESYNNLPNGVISESPESPTLKTSSTNNNNVNNNKEQDRFLPIANVGRIMKKVMPPNGKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFDDYVDPLKCYLQKYRDIEGEKLNIPKHQRSEQRLHHHHNHQDQTNNINNNNNLPLSSVYSSTNLISQPPYVPGGQPYTLPFSPNSIKQDQIDSVGHWVKVGHLLLLPVADEENKEHAYALAPKICS 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1267 237 ProSitePatterns NF-YB/HAP3 subunit signature. 73 89 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele17g1267 237 MobiDBLite consensus disorder prediction 1 40 - -
Lele17g1267 237 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Lele17g1267 237 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Lele17g1267 237 PRINTS CCAAT-binding transcription factor subunit A signature 70 88 - -
Lele17g1267 237 FunFam Nuclear transcription factor Y subunit B-3 31 156 - -
Lele17g1267 237 Gene3D Histone, subunit A 31 165 IPR009072 GO:0046982
Lele17g1267 237 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 42 106 IPR003958 -
Lele17g1267 237 MobiDBLite consensus disorder prediction 8 40 - -
Lele17g1267 237 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 25 161 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele17g1267 237 MobiDBLite consensus disorder prediction 140 161 - -
Lele17g1267 237 SUPERFAMILY Histone-fold 39 154 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1267 Lele-ChrLele17 22275631 22277281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1267 12 208 CCAAT-HAP3 Transcription Factor Family AT2G13570 60.748 8.50e-70 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele17g1267 CBFD_NFYB_HMF 3.2e-27 CL0012