Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1250 ATGGACCGCTCCCAAGTTACTTGTGTGTACAAGTGCTTGCATTATAGGCACGACCGCTTAAAAAGATATTTGGAGAGGGAAAGCGGAGGAGGAGGAGGAGCCATGGGAGATGGCAATAGTACCACCGGCCGGTCCAACAACAATAACAGTAATAAGCCTGAGTGGCTACAACAGTACGATCTGATTGGGAAAATTGGGGAAGGTACCTATGGTCTTGTATTCCTCGCAAGGATCAAGTCTGCAACGAATCGTGGAAAATCAATTGCCATCAAGAAATTCAAGCAGTCTAAGGATGGCGACGGAGTCTCTCCTACCGCTATCCGTGAAATCATGTTACTCAGGGAGATAACGCACGAAAATGTTGTGAAGCTTGTGAATGTTCACATCAATCAAGCGGATATGTCTCTGTACCTAGCTTTTGATTATGCTGAACATGACCTTTATGAAATCATTCGGCATCACAGGGACAAAGTCAACCATTCTATTAATCAATATACTGTTAAATCATTACTTTGGCAGTTGCTCAATGGACTTAACTATCTGCATAGTAATTGGATAATTCATCGAGACCTTAAGCCATCGAATATATTGGTTATGGGTGAAGGAGAGGAACACGGAGTTGTTAAAATTGCTGACTTTGGACTTGCAAGGATATATCAGGCCCCATTAAAGTCATTATCTGAAAATGGAGTTGTTGTTACCATATGGTATCGTGCACCTGAGTTGCTTCTTGGGGCTAAACATTATACCAGTGCTGTTGATATGTGGGCTGTTGGATGCATTTTTGCCGAGCTGTTAACACTGAAGCCACTATTTCAAGGAGCAGAAGTCAAAGCCACACCTAATCCATTTCAGCTTGATCAACTTGACAAGATATTCAAGGTTTTAGGCCATCCCACATTAGAAAAGTGGCCTACCCTAGCATTCCTTCCCCACTGGCAACAAGATCTTCAGCATATACAAGGGCACAAATATGACAATACTAGCCTTTGTAATGTTGTACACCTACCTCCAAAAAGTCCTGCTTATGATCTCCTATCAAAGATGCTTGAATATGATCCTCGAAAGCGGATAACGGCATCACAAGCTTTGGAACATGAGTATTTCAAAATGGAACCACTGCCTGGGCGGAATGCTCTTGTACCCTGCCAACCTGGAGAGAAAATTGTGAATTACCCTACTCGTCCAGTTGACTCAACAGTAGATTTTGAAGGGACAACCAATTTGCAACCTTCTCAACCGGTTTCATCTGGAAATGCTGTTTCTGGCAACATGACGGGTGGTCATGTATCAAATAGATCTGTCCCTCGGCCCATGAATGTTGCTGGCATGCAAAGGATGCCACATATGCAAGCTTATAATCTTGCGTCCCAGGCAGGGATGGGTGGTGGAATGAATTCTAACCTCCCTATGCCACGAGGTGTTGCCCAGGTTCATCAGCAGCAGCAGTTGAGAAGGAAAGACGGTGGAATGATGTTGCCTGGATACCCTCCACAGCAAAAATCAAGGCGTAACTAA 1518 0.4394 MDRSQVTCVYKCLHYRHDRLKRYLERESGGGGGAMGDGNSTTGRSNNNNSNKPEWLQQYDLIGKIGEGTYGLVFLARIKSATNRGKSIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINQADMSLYLAFDYAEHDLYEIIRHHRDKVNHSINQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGVVKIADFGLARIYQAPLKSLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEVKATPNPFQLDQLDKIFKVLGHPTLEKWPTLAFLPHWQQDLQHIQGHKYDNTSLCNVVHLPPKSPAYDLLSKMLEYDPRKRITASQALEHEYFKMEPLPGRNALVPCQPGEKIVNYPTRPVDSTVDFEGTTNLQPSQPVSSGNAVSGNMTGGHVSNRSVPRPMNVAGMQRMPHMQAYNLASQAGMGGGMNSNLPMPRGVAQVHQQQQLRRKDGGMMLPGYPPQQKSRRN 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1250 505 CDD STKc_CDK8_like 58 369 - -
Lele17g1250 505 Pfam Protein kinase domain 59 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1250 505 Gene3D Phosphorylase Kinase; domain 1 43 141 - -
Lele17g1250 505 PANTHER CELL DIVISION PROTEIN KINASE 57 375 - -
Lele17g1250 505 ProSitePatterns Serine/Threonine protein kinases active-site signature. 186 198 IPR008271 GO:0004672|GO:0006468
Lele17g1250 505 FunFam Cyclin-dependent kinase e-1 47 142 - -
Lele17g1250 505 Gene3D Transferase(Phosphotransferase) domain 1 142 384 - -
Lele17g1250 505 ProSitePatterns Protein kinases ATP-binding region signature. 65 92 IPR017441 GO:0005524
Lele17g1250 505 MobiDBLite consensus disorder prediction 26 52 - -
Lele17g1250 505 MobiDBLite consensus disorder prediction 463 505 - -
Lele17g1250 505 MobiDBLite consensus disorder prediction 38 52 - -
Lele17g1250 505 SUPERFAMILY Protein kinase-like (PK-like) 54 371 IPR011009 -
Lele17g1250 505 ProSiteProfiles Protein kinase domain profile. 59 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1250 505 FunFam Putative cyclin-dependent kinase E-1 143 382 - -
Lele17g1250 505 SMART serkin_6 59 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1250 Lele-ChrLele17 22162080 22169056 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1250 35 504 Core Cell Cycle Gene Families AT5G63610 76.891 0.0 729
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CDK8 Lele17g1250 Pkinase 4e-68 CL0016