Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1196 ATGACTATGGGGATACGTGAAGACGACATGTTGTGGCATGATCAAGAGAGAGAAAGAACAAAGCAGTTAGAAATGGGGATACGTGAAGACGACATGTTGTGGCATGATCAAGAGAGAGAAAGAACAAAGCAGTTAGAAATGGGGATACGTGAAGACGACATACGTCGAGGACGACGAAGAAGAGGTGGAAGAAGAATATTTATTCATTTTTCGAAAATGCATTTCGCTAAACTTGATGATTCGCCAATGTTCCGGCAACAGCTGCAATGCTTGGAAGAAGGTGTAGATTCATTGCGGATGAGATGCCAAAAGTTCTACAAAGGATGTCGCAAGTACACGGAAGGTCTTGGAGAGGGATATGATGGGGACATTGCTTTTGCGAGCGCTCTTGAAACTTTTGGGGGAGGGCATGGTGATCCTCTTTTTGTTGCTTTGGGAGGACCTGTTATGACCAAATTCACTATTGCTTTGAGAGAAATTGGTACCTACAAAGAAGTTCTGCGGTCGCAGGTGGAGCACATGCTTAATGACCGGTTGTTACACATTCTCAATGTTGACATCCTCGATGTTAAGGAAGCTCGAAAGCGGTTTGACAAAGCTTCCCTTGCATATGATCTGGCACGCGATAAGTTTCTGTCATTGAGAAAGAGCACTAGGATGGATGTTGCTAATGCCATCGAAGAGGAATGGCACAGTGCAAGAAATTCATTTGAGGAAGCCCGTTGCAATCTGGTTAGTGCTCTAAATAATGTTGAGGCCAAGAAGAGATTTGAATTTTTAGAGGCTGTCAGTGGAATTATGGATGCTCATCTTCGATACTTTCAACAGGGATATCAGCTATTGCATCAGATGGAACCTTTCATTACTGAGGTCTTGGCTTATTCACAGCAGTCAAGAGAAAGTTACAATACGGATCAGATCTCTCTAAATGAAAAAATGCAAGAGTACAAAAGACAAATTCACCAAGAAAGTAGATTGTCTTTAAATGGTCCCCATGGTTCTCCTGGAGAATGTGTACAGCCTTTTTCTAGGATATCAAATGAAGTGGTAGATGCAGTAAAAGAATCTGCTGCAAATGGGAAGGTTCAAATTATTCGACAAGGGTTTCTTTCAAAACGCTCCTCCAATCTGAGGGGTGACTGGAAGAGAAGGTATTTTGTTCTTGATAGTCGAGGAATGCTGTTCTATTATCGCAAACCATGGAACTTGGCACATAGTGGCAATCCACCATCTGTACAGAGAAATAATGCCAATGAAACTGGTTCTGGAATTCTGAGCCGGTGGCTTTCTTCTCATTATCATGGGGGTGTCCATGATGAGCGATCTGTGGCACGCCATGCAGTGAACCTGCTTACATCAACTATTAAGGTTGATGCTGATCAGTCAGATTTAAGATTTTGCTTCCGGATTATTTCACCAGTAAAGAACTATACATTGCAGGCAGAAAATGCAGTGGACCAGATGGATTGGACTGAAAAAATGACCGGAGTAATTGCTTCCTTGTTGAGTGTTCAGTCAGTTGAAATGCCACTCACAGCTGACTCTGAAAGTGGTGTATGTTCCTCTTCAAGCAATATTGATATGCTGGAAAACTTTCAAGACGATATTCAACCAATGAGTAAGGAGTGTGCATCCAAGAACATCACTTCTAACAATCATTTGCGTGAATATAAAAGTTTTCAGTTGCATAAACAGAGTACGAGAGGTGAAAACCCAATTGATGTTCTTAGAAGGGTAAGTGGAAATGACAGATGTGCAGATTGTGGTAAACCTGAACCAGAATGGGCATCCTTAAACCTTGGTATTCTCATATGCATCGAGTGTTCTGGCATTCATCGTAATCTTGGTGTACATATATCAAAAGTAAGATCACTAACACTTGATGTGAAAGTATGGGACCCTTCTGTCCTAACCATGTTTCAGTCCCTGGGCAATTATTTTGCCAACTCAGTTTGGGAAGAGAAGTTGCATTCAGCAAGTAAAATGCAAGCTGCTGACATGACTGTTGAAAACAAATTATTACGTGCGAGGAAACCAGAACATGATGATTCTATTTCATTAAAAGAGAGATATATTCATGCAAAGTATTCTGAGAAAATCTTTGTCGATCAGATAAAGAATAACAACCATCTCCTTTCAGTGGCACAGCAGTTGTGGGAAAGCGTCTGTGCCAATGACAAGAAAGCAGCATACCGGAATATTGTGAAGTCTGATTTGGACGTCAATGCTGTCTGTGGGCAAGAATATTTTGATGATGCTTTTGACGTGCCTTCTTCAAGCAACTCAAAATCTTCAGCTAAGAGTGAAAATCAGCCAATAGAGGACATACTTGACGGTTCAACCGTGCTTCACCTGGCATGCCTGACTGCTGACATTGCCATGGTGGAGCTACTCTTACAATATGGCGCAGACATAAATGCTTCCGATTCAAGAGGTCGCACCCCATTGCATTACTGTATCATCAGAGGGAAGAATGCGACTGCAAAATTTCTTCTTATGAGGGGGGCCAACCCACATGCTGCAGATGATGATGGCAATACTCCTCTTAAACTTGCATCAGAATCCGCTTCTATTAGCAATGATGTTCTCGCCCTCATTACAAGAAGATGA 2610 0.4192 MTMGIREDDMLWHDQERERTKQLEMGIREDDMLWHDQERERTKQLEMGIREDDIRRGRRRRGGRRIFIHFSKMHFAKLDDSPMFRQQLQCLEEGVDSLRMRCQKFYKGCRKYTEGLGEGYDGDIAFASALETFGGGHGDPLFVALGGPVMTKFTIALREIGTYKEVLRSQVEHMLNDRLLHILNVDILDVKEARKRFDKASLAYDLARDKFLSLRKSTRMDVANAIEEEWHSARNSFEEARCNLVSALNNVEAKKRFEFLEAVSGIMDAHLRYFQQGYQLLHQMEPFITEVLAYSQQSRESYNTDQISLNEKMQEYKRQIHQESRLSLNGPHGSPGECVQPFSRISNEVVDAVKESAANGKVQIIRQGFLSKRSSNLRGDWKRRYFVLDSRGMLFYYRKPWNLAHSGNPPSVQRNNANETGSGILSRWLSSHYHGGVHDERSVARHAVNLLTSTIKVDADQSDLRFCFRIISPVKNYTLQAENAVDQMDWTEKMTGVIASLLSVQSVEMPLTADSESGVCSSSSNIDMLENFQDDIQPMSKECASKNITSNNHLREYKSFQLHKQSTRGENPIDVLRRVSGNDRCADCGKPEPEWASLNLGILICIECSGIHRNLGVHISKVRSLTLDVKVWDPSVLTMFQSLGNYFANSVWEEKLHSASKMQAADMTVENKLLRARKPEHDDSISLKERYIHAKYSEKIFVDQIKNNNHLLSVAQQLWESVCANDKKAAYRNIVKSDLDVNAVCGQEYFDDAFDVPSSSNSKSSAKSENQPIEDILDGSTVLHLACLTADIAMVELLLQYGADINASDSRGRTPLHYCIIRGKNATAKFLLMRGANPHAADDDGNTPLKLASESASISNDVLALITRR 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1196 869 ProSiteProfiles Ankyrin repeat profile. 778 810 IPR002110 GO:0005515
Lele17g1196 869 SMART PH_update 364 501 IPR001849 -
Lele17g1196 869 Gene3D - 716 868 IPR036770 -
Lele17g1196 869 ProSiteProfiles ARF GTPase-activating proteins domain profile. 570 709 IPR001164 GO:0005096
Lele17g1196 869 CDD ArfGap 573 696 - -
Lele17g1196 869 Gene3D Arf GTPase activating protein 550 710 IPR038508 -
Lele17g1196 869 SUPERFAMILY PH domain-like 276 498 - -
Lele17g1196 869 SUPERFAMILY Ankyrin repeat 777 855 IPR036770 -
Lele17g1196 869 ProSiteProfiles Ankyrin repeat region circular profile. 811 843 - -
Lele17g1196 869 SUPERFAMILY ArfGap/RecO-like zinc finger 571 703 IPR037278 -
Lele17g1196 869 ProSiteProfiles Ankyrin repeat region circular profile. 778 809 - -
Lele17g1196 869 Coils Coil 299 319 - -
Lele17g1196 869 Gene3D Arfaptin homology (AH) domain/BAR domain 76 323 IPR027267 -
Lele17g1196 869 Pfam BAR domain of APPL family 78 304 - -
Lele17g1196 869 SMART ANK_2a 778 807 IPR002110 GO:0005515
Lele17g1196 869 SMART ANK_2a 811 840 IPR002110 GO:0005515
Lele17g1196 869 Pfam Putative GTPase activating protein for Arf 573 703 IPR001164 GO:0005096
Lele17g1196 869 SUPERFAMILY BAR/IMD domain-like 78 386 IPR027267 -
Lele17g1196 869 CDD PH_ACAP 366 503 - -
Lele17g1196 869 ProSiteProfiles Ankyrin repeat profile. 811 843 IPR002110 GO:0005515
Lele17g1196 869 PRINTS HIV Rev interacting protein signature 601 618 IPR001164 GO:0005096
Lele17g1196 869 PRINTS HIV Rev interacting protein signature 624 645 IPR001164 GO:0005096
Lele17g1196 869 PRINTS HIV Rev interacting protein signature 582 601 IPR001164 GO:0005096
Lele17g1196 869 ProSiteProfiles PH domain profile. 363 499 IPR001849 -
Lele17g1196 869 SMART arf_gap_3 570 709 IPR001164 GO:0005096
Lele17g1196 869 Pfam Ankyrin repeats (3 copies) 783 866 IPR002110 GO:0005515
Lele17g1196 869 PANTHER CENTAURIN/ARF 71 866 IPR045258 GO:0005096
Lele17g1196 869 FunFam ADP-ribosylation factor GTPase-activating protein AGD1 552 710 - -
Lele17g1196 869 Pfam PH domain 365 495 IPR001849 -
Lele17g1196 869 Gene3D - 356 509 IPR011993 -
Lele17g1196 869 CDD BAR_SFC_plant 87 287 IPR035670 -
Lele17g1196 869 SMART 5bar 69 290 IPR004148 GO:0005515|GO:0005737
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1196 Lele-ChrLele17 21859970 21868354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1196 556 703 C2H2 Transcription Factor Family AT3G07940 35.099 2.63e-21 93.2