Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1191 ATGCCTTTTGAAATAATGAACCAGAGGGGCATATCTGCCTCGTCCCACCTTTTTGATGACAATTCCTTTTTTCCTGAGAGGAGTGTTGGATTGCAGAAGTCAAAATCCTTTCATGATCATTATTTACAAGGGAAAATGGAAGCATCACCCCGAGGCATTTCAAGTACATCGTCATCTCTAGAAATGAGTGCTAACTCTGGCTTGCCAACGTCACAAACAAGTCTGTCGGGAGAAGTTACGGAAAAGCTGCATGTTGGGGGAGGAGGCATCATTGATGTGTTGAAGTCTCCCAAGGAATCAATGAATCATCACCCCATATCAATGTCTAATGCGCATGTGCGTATGCAGCCAGAATCTACATCTTATAACTTAACTGGAAAAAAGATTCTCACTGATACTGCTTCTCATGAGAGCAGCCTATTCTCTAGCTCACTGTCCGATATATTTAGCCAAAAATTGAGGTTATCTCGGAATGATATTTTGTCTTGTCAGCCTGTAACCATTGGTTCGTTTCCTGAGGAAGAACCATATAAATCTCTTGAAGAAATTGAGGCAGACACTATTGGGAATCTCCTTCCTGATGAAGATGATCTGTTTTCTGGTGTTACTAATGAGTTAGGATACACTGCCAATGCCAGAACAAGTGATGACTTTGAGGAGTTTGATTTATTTAGCAGTGGCGGAGGCATGGAACTTGAAGGAGATGAACATCTAAGTTTGAGAAAGAAAATCGGTAGTCTGGATATGGATTCTGGTTATTTTGGATGTTTTAAAGGAAAACTTCCTTTTGGTGAACAACCTTCTAGAACACTTTTTGTTAGAAACATCAATAGCAATGTTGATGATTCTGAGCTAAAGGCTCTTTTTGAGCAATATGGAGACATCCGAACCATTTATACAGCCTGCAAGCATCGTGGGTTTGTGATGATTTCTTACTATGACCTAAGGGCAGCACAAAATGCAATGCAAGAACTTCAGAATAGGTCACTGAGGTCTAGGAAACTGGATATTCATTATTCAATTCCAAAGTGTAATGCTCCTGAGAGGGATATAAGCCATGGCACGCTAGTGCTATCTGGTCTTGATTCTTCTGTTGCAAATGATGAGCTTCAACAGATTTTTGGATTTTATGGAGAAATAAAAGAAGTCTATGAATCTCCCGAAGTAAATTATAAAAAAGTTATTGAATTTTATGATGTGCGAGCCGCAGAAGCTGCTCTTCGTGCATTAAACAGAAGTGACATTGCTGGTAAGCCGGTCAAAATTGAACCTGGCCATCCTCGGGGAACAACATGTCTGACGCATGAGTCTAACAATGGCCAAGATGAACCTGATTTTGGTCAAAGTCTCTGTGACAACTTATCACTAAGACAAAAGGCAACGATGTCTTCTGGAGTAATTGCTTCTGGCTGCTTAGAAAATGGACCTAATTCGGGATTTCGCTCTGCAATACAGCAACCTATTAATGCATTGATTGATAATGCTTTCTCTCCTGTGAATTCTAGCATCCACAAATCAGTGAGAAGGCCAACTTCTGGAAAAGTGCCTGGTGTTGGTGATTCCATTAACTTCCTCGATGCAATGAAATTTGCTTCTGTTCCAAGATTCCATCCTCATTCCCTCCCTGATTATCATGATAGTTTTGCTAATGGTAGTGCTTACAACCTTCTTGTTGGCAATGTGGCTGGCACTATTGGTACTGCAGTGACAGACAGCTCAGATAGCAGGCACAATCCGGGAATAGGTTCAACTGGGAATCTGATGGAATTTACTGGAGCAGGAAATGGGAACCATCAACGTCCACTTTATCATGTGTGGAACAGCTCCAATTTGCATCAGGAACCTTCACCAAATCCTGTGCTTTGGCAGAAAACACCATCGTTTGTTAACAGTGCTTGTGCTCCTGGCCTTCCGCAAATGCCTGGCTTTCCTAGAACGCAACCTCACATGCTGAGAGCTTCACATATGGACCATCATGTTGGGTCAGCTCCTGTTAATGCCTCACCCTGGGACAGGCAGCACTCTTATTTGGGAGTGTCTCCTGAAACTTCTGGTTTTCGTATGGGTTCTCTGGGAAGTTCTGGTTTACCTGGTAGCTGGCAATTGCATCCTCCAGATTTTTCTTCTCACAACATGTTTCCTCATGTCGGTGGAAATGGTGCAGAGTTGACGCCAACTGCTGGGCAAAACTCTCCTAGTCAGTTGTCACATGTTTTCCCTGGGAGACATCTCATGACTTCTATGTCCAAACTTGATTCCAATGAACGAATGAGGAATCTGTATCCCCTCCGGAAAAGTGAAGCTAACGCTAATAATGCTGATAAAAAGCAATATGAACTTGATCTGGGCAGCATACTGCGTGGGGAAGACAGCCGAACAACTCTAATGATAAAAAATATTCCCAACAAGTATACTTCAAAGATGCTTCTAGCTGCTATAGATGAGCAATGTCGGGGAACTTATGATTTTCTATATTTGCCAATTGACTTTAAGAACAAATGTAATGTTGGCTATGCATTTATTAATATGATAGATCCTGCTCAGATCATTCCATTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTGGCCTTACTTGCATATGCCCGAATTCAGGGTAAAGCTGCACTTATTGCTCACTTCCAGAATTCAAGCCTGATGAATGAAGACAAGCGTTGCCGTCCTATTCTGTTCCACACAGATGGCCCGAATGCTGGTGATCCGGAGCCCTTCCCCATGGGTACTAACGTTAGAATGAGGCCCGGAAAATCTCGCGGTAGTAGTAATAACGAGGAGAATCGCAGCCAGGGGAGTCCTTCAACTTTGGCAAGCGGAGAGGGATATACTACTAATGTAACAGATTCTTCATTGAGCTCTTAA 2898 0.4231 MPFEIMNQRGISASSHLFDDNSFFPERSVGLQKSKSFHDHYLQGKMEASPRGISSTSSSLEMSANSGLPTSQTSLSGEVTEKLHVGGGGIIDVLKSPKESMNHHPISMSNAHVRMQPESTSYNLTGKKILTDTASHESSLFSSSLSDIFSQKLRLSRNDILSCQPVTIGSFPEEEPYKSLEEIEADTIGNLLPDEDDLFSGVTNELGYTANARTSDDFEEFDLFSSGGGMELEGDEHLSLRKKIGSLDMDSGYFGCFKGKLPFGEQPSRTLFVRNINSNVDDSELKALFEQYGDIRTIYTACKHRGFVMISYYDLRAAQNAMQELQNRSLRSRKLDIHYSIPKCNAPERDISHGTLVLSGLDSSVANDELQQIFGFYGEIKEVYESPEVNYKKVIEFYDVRAAEAALRALNRSDIAGKPVKIEPGHPRGTTCLTHESNNGQDEPDFGQSLCDNLSLRQKATMSSGVIASGCLENGPNSGFRSAIQQPINALIDNAFSPVNSSIHKSVRRPTSGKVPGVGDSINFLDAMKFASVPRFHPHSLPDYHDSFANGSAYNLLVGNVAGTIGTAVTDSSDSRHNPGIGSTGNLMEFTGAGNGNHQRPLYHVWNSSNLHQEPSPNPVLWQKTPSFVNSACAPGLPQMPGFPRTQPHMLRASHMDHHVGSAPVNASPWDRQHSYLGVSPETSGFRMGSLGSSGLPGSWQLHPPDFSSHNMFPHVGGNGAELTPTAGQNSPSQLSHVFPGRHLMTSMSKLDSNERMRNLYPLRKSEANANNADKKQYELDLGSILRGEDSRTTLMIKNIPNKYTSKMLLAAIDEQCRGTYDFLYLPIDFKNKCNVGYAFINMIDPAQIIPFHQAFNGKKWEKFNSEKVALLAYARIQGKAALIAHFQNSSLMNEDKRCRPILFHTDGPNAGDPEPFPMGTNVRMRPGKSRGSSNNEENRSQGSPSTLASGEGYTTNVTDSSLSS 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1191 965 CDD RRM1_MEI2_like 268 343 IPR034453 -
Lele17g1191 965 SUPERFAMILY RNA-binding domain, RBD 266 428 IPR035979 GO:0003676
Lele17g1191 965 SMART rrm1_1 270 338 IPR000504 GO:0003723
Lele17g1191 965 SMART rrm1_1 355 423 IPR000504 GO:0003723
Lele17g1191 965 SMART rrm1_1 794 870 IPR000504 GO:0003723
Lele17g1191 965 FunFam Protein MEI2-like 1 353 447 - -
Lele17g1191 965 CDD RRM3_MEI2_like 795 880 IPR034454 -
Lele17g1191 965 FunFam MEI2-like protein 5 isoform 2 258 352 - -
Lele17g1191 965 MobiDBLite consensus disorder prediction 47 77 - -
Lele17g1191 965 PANTHER RNA RECOGNITION MOTIF-CONTAINING 98 942 - -
Lele17g1191 965 MobiDBLite consensus disorder prediction 927 965 - -
Lele17g1191 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 354 427 IPR000504 GO:0003723
Lele17g1191 965 MobiDBLite consensus disorder prediction 49 77 - -
Lele17g1191 965 Pfam RNA recognition motif 2 792 888 IPR007201 -
Lele17g1191 965 Gene3D - 263 346 IPR012677 -
Lele17g1191 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 335 IPR000504 GO:0003723
Lele17g1191 965 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 356 420 IPR000504 GO:0003723
Lele17g1191 965 SUPERFAMILY RNA-binding domain, RBD 794 879 IPR035979 GO:0003676
Lele17g1191 965 Coils Coil 315 335 - -
Lele17g1191 965 Gene3D - 347 432 IPR012677 -
Lele17g1191 965 MobiDBLite consensus disorder prediction 905 965 - -
Lele17g1191 965 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 342 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1191 Lele-ChrLele17 21829179 21835203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1191 264 422 Eukaryotic Initiation Factors Gene Family AT3G16380 25.000 4.45e-08 55.1