Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1170 ATGGGGATGAGGTGGAATCAGGGAAAGATAATGAAGACTCCTTCTCCTTCTTCCTCTCTCTCTCTGCACCAACCTACTGCTGCATCTTCCTCTGCGACTAACAGATATCATACAGGAGATAAAGTACAAAAAAGAATAACCTTGATGGATTGGAATTTGAAGGGTGGCTCCTGGGATTTGAGTGAATTAGATGGAGGAGGTTTACCCAACGTAGAAACGAGAGTAGATAATTATAACGGATCAAGCAGATTTGGATTTGGATTAGTGAACGGAAGTGGAGGCGAATTCTGTGTTGATTTGAAGCTGGGTCAGGTCGGGAATTCTGGGACTGAACCATCAGGACCAAAGTGGAAAGTTGCTAGTGCTCCTGCTGGCGGCGGCGGTGTCTCGAAAACGGCAGCGTCAGGCACTTCAGGATCATCGAAGAGAGCTCGAGCAATCAACAACGGGACCCAAACGGCGTCGTGCCTGGTGGATGGGTGCAGTTCAGATCTGAGTAACTGTAGGGAGTATCACCGGCGTCACAAGGTGTGCGAACTCCATTCTAAGACCCCTGTGGTCACCATTAGCGGCCTCAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCCCTGGAAGAATTTGATGAAGGGAAGAGAAGCTGCAGGAAGCGATTAGATGGGCACAACCGACGGAGAAGAAAGCCCCAACCAGTTCCTCTCACTCGTTCTGCTACTTTATTCTCGAATTACCACCAAGTTTCGGGGAGGCAGTTACTGCCGTTATCATCGGACTCAAATCTCTATCCTTCAAGTGCTGTGGTGAAACCTGGTTGGGACCGGGAATGGGATGGTAGGACGGTGGTTCATCATCATCATAATAATAATATGCCGCAGCTATTTCTTGGGTCTTCTGAAAACGCCAGAATTAAGCAGGAAACGACGACATATCATGAAGCTGATTCTGCGTGCCACGCGCTTCTGAGGACCACGGCGGTCAGGCCTGGATCTTTCTCATCGGCGGAGTCTCCTCCTCCTCCGCCTTGTGCTCGCTCTCTTCTGTCATTACCGCCGGCACCCATGTACCTGTCGCAGCCTCTAGGCCCCACCACCCTCCATGATCGTCACTCCTTACAAGAGGACGTGGACACCACACTTCTGGTGAGCAATGGGACTCAGCCTTCGATGTATAACTTATTAGGGTCTGATGCATCATCACAGGGGATCCATACTTCTCAGTCACTTCCATTTCATTGGGAATAA 1245 0.4988 MGMRWNQGKIMKTPSPSSSLSLHQPTAASSSATNRYHTGDKVQKRITLMDWNLKGGSWDLSELDGGGLPNVETRVDNYNGSSRFGFGLVNGSGGEFCVDLKLGQVGNSGTEPSGPKWKVASAPAGGGGVSKTAASGTSGSSKRARAINNGTQTASCLVDGCSSDLSNCREYHRRHKVCELHSKTPVVTISGLKQRFCQQCSRFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPVPLTRSATLFSNYHQVSGRQLLPLSSDSNLYPSSAVVKPGWDREWDGRTVVHHHHNNNMPQLFLGSSENARIKQETTTYHEADSACHALLRTTAVRPGSFSSAESPPPPPCARSLLSLPPAPMYLSQPLGPTTLHDRHSLQEDVDTTLLVSNGTQPSMYNLLGSDASSQGIHTSQSLPFHWE 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1170 414 MobiDBLite consensus disorder prediction 10 36 - -
Lele17g1170 414 SUPERFAMILY SBT domain 155 232 IPR036893 GO:0003677|GO:0005634
Lele17g1170 414 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Lele17g1170 414 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 39 387 IPR044817 GO:0003677
Lele17g1170 414 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Lele17g1170 414 Pfam SBP domain 156 229 IPR004333 GO:0003677
Lele17g1170 414 MobiDBLite consensus disorder prediction 108 144 - -
Lele17g1170 414 MobiDBLite consensus disorder prediction 1 36 - -
Lele17g1170 414 MobiDBLite consensus disorder prediction 392 408 - -
Lele17g1170 414 MobiDBLite consensus disorder prediction 392 414 - -
Lele17g1170 414 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1170 Lele-ChrLele17 21720177 21723277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1170 49 273 SBP-box Gene Family AT5G50670 50.847 5.28e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele17g1170 SBP 8.6e-31 No_clan