Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1129 ATGAAAAGGTATCACGTTTCTAAAACTAACTTCAATAAGCTCATTAAAAATGTAAATCACCCACGACATTTCCTTACCAAGATAACGAGTGGGCAAGAAAAGCATAAGGTTCATAGCCATTTTGATCGGTCGCTTGAGAGCGGTCCTTATACACTCAAGTATAAGGGTAGCATGTGGGGATACAAACGGTTTTATAGACGTTCTTTGCTTGAAACCTCCGATTATCTGAAGGATGATTGCCTGAAATTCAACTGTACAGTTGGAGTTGTATTTTCAGCTGTAGATTGTCCTCGACTTCACTCAGTTAAGGTTCCAGAATCTGACATTGGAGCACACTTTGGCATGTTATTGGAAAGTATGGAGGGTTCAGATATTACTTTTAATGTGGCTGGGGAAAAGTTTGCTGCTCATAATTTGGTATTGGCTGCTAGATCCCCAAAATTTCACTCAAAATTATTTGAAGGTTTAGATGAGGACGAGGAAATTATTGTGACAGATTTAGAACCTAAGGTTTTTAAGGCCATGCTGCACTTTATCTATCGAGATACCCTTACAGATGAGGTTGACATGATTCCATCAACCTCATCTAGTGAATCCTCTGTGTCTGAGACATTGTCAGGAAAGTTGTTAGCTGCAGCAGACAAGTACGGCTTGGAGAGGCTTAAACTGATGTGTGAATCTAGTATATGCAAAGACATCTGTATAAATTCTGTTGCAGACATATTAACCTGGGCCGAACAATGCCATGCAAGAGAGTTGAAAGATGTTTGCTTAAAATTTGCTGCGCAGAATCTAGCAGCTGTGATGAGGTCAGATGGATTTCAGTCCATGAAAGATAAATGCCCATGGCTACAGTCAGAGATGTTGATGACAATTGCAGGGTGTGAGAGTGATTACTGCAGTGCTGGGGGGAAATCTCGGAGTGTGTGGGCCCAACTTTCTGATGGAGAAAAAAGATGA 960 0.4083 MKRYHVSKTNFNKLIKNVNHPRHFLTKITSGQEKHKVHSHFDRSLESGPYTLKYKGSMWGYKRFYRRSLLETSDYLKDDCLKFNCTVGVVFSAVDCPRLHSVKVPESDIGAHFGMLLESMEGSDITFNVAGEKFAAHNLVLAARSPKFHSKLFEGLDEDEEIIVTDLEPKVFKAMLHFIYRDTLTDEVDMIPSTSSSESSVSETLSGKLLAAADKYGLERLKLMCESSICKDICINSVADILTWAEQCHARELKDVCLKFAAQNLAAVMRSDGFQSMKDKCPWLQSEMLMTIAGCESDYCSAGGKSRSVWAQLSDGEKR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1129 319 Gene3D - 232 305 - -
Lele17g1129 319 SUPERFAMILY TRAF domain-like 31 89 - -
Lele17g1129 319 ProSiteProfiles BTB domain profile. 123 188 IPR000210 GO:0005515
Lele17g1129 319 SUPERFAMILY POZ domain 101 232 IPR011333 -
Lele17g1129 319 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 31 289 IPR045005 GO:0016567
Lele17g1129 319 CDD MATH 54 87 IPR002083 GO:0005515
Lele17g1129 319 CDD BTB_POZ_BPM_plant 109 230 - -
Lele17g1129 319 Pfam BTB/POZ domain 116 231 IPR000210 GO:0005515
Lele17g1129 319 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 10 90 IPR008974 GO:0005515
Lele17g1129 319 Gene3D Potassium Channel Kv1.1; Chain A 99 227 IPR011333 -
Lele17g1129 319 SMART BTB_4 123 233 IPR000210 GO:0005515
Lele17g1129 319 FunFam BTB-POZ and math domain 1 99 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1129 Lele-ChrLele17 21535092 21536550 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Lele17g1129 BTB 4.3e-21 CL0033