Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1123 ATGTATCCTCCTCTTTATAGAGTCGCCGTCAAGGATGAGATTGGTGGTGGTGATAATGAAAATTTAGTATTTGGCCTCAGTCTTCAACTCGCAGCAATGGGTTGCTATACTTATCCTCGTATTCTCACTTCTGCAGCTTCCACTAATTGGATCCTTCCTCGTTCTGATGATGATGAAACCAAGAGGGATCTAAAAATGATTAAGAGAACCATAAGCATGTCCGATTTGCTTGGAGATTTCACCAGTAATCATTCGAGCAGTGGAAATAATGGCGATACACGTGGCAGCAGCAATATGAATAGCTTGCCAAGGCTTCATTTCAGAGATCACATATGGACTTATACTCAGAGATACCTTGCAGCTGAAGCTGTCGAAGAAGCAGCAAAAGAGATGATCGATTCTGAAACTCATCATGAAGATGAAGCTGAGAAAGATGGATGTGCTGACGGAATGAGACTTGTTCAACTTCTAATTGCTTGCGCAGAAGCTGTAGCTTGTCGTGACAAATCACATGCTTCTAATTTACTATCTCAACTTAGATCCAATGCTTTGGTTTTCGGTTCTTCTTTTCAAAGAGTTGCTTCTTGTTTCGTCCAAGGCCTAGCTGATCGTCTTGCTTTGATTCAAACTATTGGAGCTGTGGGATCTGTAACGCCTATAATGAACATTATGGATAAAGCTTCTGCAAAAATGGAAGAAGCTTATAAATTCATGTATGAGATTTGCCCACATATTCAGTTTGGTCACTTTGTAGCTAACTCCACAATATCGGAAGTCTTTGAGGGTCAGAGTTTTCTTCACGTGGTTGACTTGGGGATGAGCCTTGGTCTCCCACAGGGACACCAATGGCGAGCACTGATCCAGGATCTTGCTTTCCGCGCCGCCGTTGAACCTGTTCGCCGGCTTCGAATTACCGGGGTTGGCCTCTGTATTGAGAGACTCAAGAACATAGGTGAAGAACTGGAGGTTTATGCCAAGAACTCAGGGATAAATCTGGAATTCTCAGCAGTGCAAAAAAGCTTGGAAAATTTGCAGCTTGATGATGTAGAAATGCGTGAGGGTGAAGTTCTTGTTGTGAACAGCATTCTTCAGTTGCATTGTGTTGTGAAGGAAAGTCGTGGAGCTTTGAACTCAGTGCTTCAGATGATCCATAAGCTTTCACCAAAAGTGTTTGTTATGGTTGAGCACGATTCAAGCCACAACGGACCCTTCTTTCTTGGGAGATTCATGGAAGCACTGCATTATTACTCTGCGATTTTTGACTCGCTTGATGCTTTGTTGCCGAAGTATGATACAAAGAGGGCGAAAATAGAACAGTTTTACTTGGCGGAGGAGATAAAGAACATAGTGAGCTGTGAGGGAGCAGCGAGGGTGGAGAGGCATGAGAGACTGGAGCAGTGGCGGAGGAGGATGAGCCGGGCCAGGTTTCAGGCGGCACCGATCAAGACGGTTGCTCAGGCCAAGCAGTGGCTTCAGAAGAAAGAGGTCAGTGATGGGTATACGGTTGTGGAAGAGAAAGGATGCTTGGTGATTGGATGGAAATCAAAGCCAATTGTTTCAGCTTCTTGCTGGAAATGCAAAATATTTAATCTTTAA 1596 0.4405 MYPPLYRVAVKDEIGGGDNENLVFGLSLQLAAMGCYTYPRILTSAASTNWILPRSDDDETKRDLKMIKRTISMSDLLGDFTSNHSSSGNNGDTRGSSNMNSLPRLHFRDHIWTYTQRYLAAEAVEEAAKEMIDSETHHEDEAEKDGCADGMRLVQLLIACAEAVACRDKSHASNLLSQLRSNALVFGSSFQRVASCFVQGLADRLALIQTIGAVGSVTPIMNIMDKASAKMEEAYKFMYEICPHIQFGHFVANSTISEVFEGQSFLHVVDLGMSLGLPQGHQWRALIQDLAFRAAVEPVRRLRITGVGLCIERLKNIGEELEVYAKNSGINLEFSAVQKSLENLQLDDVEMREGEVLVVNSILQLHCVVKESRGALNSVLQMIHKLSPKVFVMVEHDSSHNGPFFLGRFMEALHYYSAIFDSLDALLPKYDTKRAKIEQFYLAEEIKNIVSCEGAARVERHERLEQWRRRMSRARFQAAPIKTVAQAKQWLQKKEVSDGYTVVEEKGCLVIGWKSKPIVSASCWKCKIFNL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1123 531 MobiDBLite consensus disorder prediction 78 99 - -
Lele17g1123 531 ProSiteProfiles GRAS family profile. 144 525 IPR005202 -
Lele17g1123 531 Pfam GRAS domain family 153 525 IPR005202 -
Lele17g1123 531 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Lele17g1123 531 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 127 520 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1123 Lele-ChrLele17 21498055 21499650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1123 145 525 GRAS Transcription Factor Family AT1G14920 36.154 5.68e-74 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lele17g1123 GRAS 9.8e-110 CL0063
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1123 17 21498055 21499650 Lele31g0887 31 16328986 16330746 hybridization
Lele17g1123 17 21498055 21499650 Lele32g0631 32 3939602 3941251 hybridization