Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1118 ATGGGGAAAATTGAACTAACGGTCACGATATCTAGTTGGGATGAATGGATCAGGCGGGCCCTCCTTCCACGAAACGACGTCGTTACTAGTATAGGAGGCGCAATAAACGAAAGAGAAGTGCAGAGAAACAGATCGCAGATATCAGAGCATCTACTGTCTTCTGTATCTTCTCCCACATCAACACTGTTGCTTATGGCGGCTGCAGCAGTAGCCGAGCCTAGGAAAGCCCCTCGACCGGGTAAGGGCGGGTTCGAAGCTCATGGCCTTTCTGAAGAGGAAGCCCGGGTTCGAGCCATTGCAGAGATCGTCAACTCTATGGTGGACCTCTCTCGGAAAGGCCAAAACGTCGACTTGAATGCGCTCAAATCCGCAGCATGTCGCAAGTATGGACTTTCACGTGCACCCAAGCTAGTGGAGATGATAGCTGCCCTACCGGAGACGGAAAAGGAGGCGCTGCTGCCGAAGCTTCGAGCCAAACCTGTCCGAACTGCCTCTGGAATAGCCGTTGTGGCTGTCATGTCCAAGCCACACCGTTGCCCTCACATAGCGACTACTGGTAATATTTGCGTATACTGCCCCGGAGGGCCTGACTCGGATTTTGAGTACAGTACTCAGTCTTACACTGGTTACGAACCAACTAGTATGCGAGCAATTCGAGCTAGGTATAATCCATATGTCCAAGCTAGAAGCAGGATAGATCAGCTTAAGCGTTTGGGTCACAGTGTAGATAAGGTTGAGTTCATTTTAATGGGTGGTACTTTCATGTCCCTTCCGGCAGACTATCGTGATTACTTTATAAGGAATCTTCATGATGCTTTGTCTGGACACACCTCTGCAAATGTTGAAGAGGCAGTTGCCTACTCTGAGCATGGTGCAACAAAATGCATTGGCATGACAATAGAAACGAGGCCAGATTATTGTCTGGGTCCTCACTTGCGGCAAATGCTTTCTTATGGTTGTACGCGATTGGAGATTGGAGTACAAAGCACATATGAGGATGTTGCTCGAGACACTAACAGAGGGCATACAGTAGCTGCTGTTGCAGATTGTTTTTGCTTGGCAAAAGATGCTGGTTTTAAGGTTGTTGCTCACATGATGCCTGATCTTCCAAATGTTGGTGTTGAGAGGGATTTGGAAAGCTTTCGGGAATTTTTTGAGAGTCCCTTGTTTAGAGCAGATGGACTTAAAATATACCCTACACTTGTAATACGTGGAACTGGGCTTTACGAGCTCTGGAAAACTGGCAGGTATAGAAACTATCCGCCTGAGCAACTGGTGGACATCGTAGCAAGGATCCTCGCCATGGTGCCCCCTTGGACCCGTGTTTATAGAGTTCAGCGGGATATTCCCATGCCTCTGGTTACTTCTGGGGTGGAGAAAGGCAATCTAAGGGAGTTAGCTCTGGCTCGGATGGAAGACCTTGGCTTGAAATGTCGTGATGTTCGGACCCGAGAAGCTGGAATCCAGGACATTCACCACCAAATCAAGCCTGAAGAGGTGGAGCTTGTGCGTCGTGATTATATGGCAAATGAAGGCTGGGAAACATTTCTGTCGTATGAAGATACTCGACAGGATATTCTTGTTGGTTTGCTGCGTCTGCGAAAATGTGGTCGGAATACTACTTGTCCTGAACTTATGGGGAAGTGTTCTATCGTTCGTGAACTCCATGTTTATGGAACTGCCGTTCCAGTCCATGGGCGGGATGCTGACAAGCTGCAACACCAGGGTTATGGTACGCTATTAATGGAGGAAGCAGAACGAATTGCCCGCAGGGAACATAGATCAACAAAAATAGCTGTAATTTCGGGAGTAGGCACACGCCATTATTACAGGAAACTGGGGTATGAGCTTGAAGGGCCTTACATGGTGAAATATCTATCGTGA 1884 0.4814 MGKIELTVTISSWDEWIRRALLPRNDVVTSIGGAINEREVQRNRSQISEHLLSSVSSPTSTLLLMAAAAVAEPRKAPRPGKGGFEAHGLSEEEARVRAIAEIVNSMVDLSRKGQNVDLNALKSAACRKYGLSRAPKLVEMIAALPETEKEALLPKLRAKPVRTASGIAVVAVMSKPHRCPHIATTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYVQARSRIDQLKRLGHSVDKVEFILMGGTFMSLPADYRDYFIRNLHDALSGHTSANVEEAVAYSEHGATKCIGMTIETRPDYCLGPHLRQMLSYGCTRLEIGVQSTYEDVARDTNRGHTVAAVADCFCLAKDAGFKVVAHMMPDLPNVGVERDLESFREFFESPLFRADGLKIYPTLVIRGTGLYELWKTGRYRNYPPEQLVDIVARILAMVPPWTRVYRVQRDIPMPLVTSGVEKGNLRELALARMEDLGLKCRDVRTREAGIQDIHHQIKPEEVELVRRDYMANEGWETFLSYEDTRQDILVGLLRLRKCGRNTTCPELMGKCSIVRELHVYGTAVPVHGRDADKLQHQGYGTLLMEEAERIARREHRSTKIAVISGVGTRHYYRKLGYELEGPYMVKYLS 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1118 627 SFLD elongater protein-like 117 626 - -
Lele17g1118 627 SFLD ELP3-like 117 626 IPR034687 -
Lele17g1118 627 SMART MiaB 169 431 IPR006638 GO:0003824|GO:0051536
Lele17g1118 627 SUPERFAMILY Radical SAM enzymes 199 438 - -
Lele17g1118 627 TIGRFAM ELP3: radical SAM enzyme/protein acetyltransferase, ELP3 family 114 626 IPR034687 -
Lele17g1118 627 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 435 622 IPR016181 -
Lele17g1118 627 Pfam Radical_SAM C-terminal domain 393 472 IPR032432 -
Lele17g1118 627 ProSiteProfiles Radical SAM core domain profile. 162 452 IPR007197 GO:0003824|GO:0051536
Lele17g1118 627 CDD Radical_SAM 176 423 - -
Lele17g1118 627 PIRSF HAT_Elp3 84 627 IPR034687 -
Lele17g1118 627 Gene3D - 478 627 - -
Lele17g1118 627 Pfam Radical SAM superfamily 187 381 IPR007197 GO:0003824|GO:0051536
Lele17g1118 627 FunFam Elongator complex protein 3 475 627 - -
Lele17g1118 627 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 476 627 IPR000182 GO:0016747
Lele17g1118 627 Pfam Acetyltransferase (GNAT) family 479 615 IPR000182 GO:0016747
Lele17g1118 627 PANTHER HISTONE ACETYLTRANSFERASE-RELATED 81 626 IPR039661 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1118 Lele-ChrLele17 21468471 21474272 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele17g1118 Radical_SAM 2.4e-17 CL0036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1118 17 21468471 21474272 Lele19g0441 19 2514150 2518440 hybridization
Lele17g1118 17 21468471 21474272 Lele20g1010 20 16019019 16024043 hybridization