LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele17g1109	ATGGCCGTCAACACCATCCCGCCGACCGATGTTCCCGTTGTTTCCACCGTCGGCGGCATCGACTACCTGAGCTGCCGGGTCTTACCTGAACCTGATGTTTTTATTCACACATCCAGTGGCGAGCGCATTCCCGCGCACACGAGCATTCTGGCTTCAGTGTCGCCGGTTTTGGAGAATATCATAGATCAGCCCCGCAGGCATCGGAGCTCCGAGCGAGTCATTCAAATACACGGGGTTCCTTGCGAAGCCGTCACTGCTTTTCTCGGCTTCCTTTATTGTTCCAGGTGCACGAATGAGCAGATGGAGAAGTATGGGATTCATCTGTTAGCATTGTCTCACGTGTATTTGGTGCCACAACTGAAGCAGAGGTGCATCAAGGTGCTTGCCGAACGGTTAACGATCGAGAATGTGGTGGATCTGCTCCAACTCGCGAGGCTCTGTGACGCGCCAGATCTTTACATCAAGTGTATGAAGCTACTCACCAATCACTTCAAATCTGTGGAAGCAACAGAGGGCTGGAAATTCTTGCAGAAGTATGATCCATGGCTTGAGCTGGACATCCTCCAATTCATGGATGAGGACGAATCGAGGAAGAAGAAATCGAGGAAGCAGAGGGAACAGCTGAGGCTGTACGCAGAGCTGAGTGAGGCGATGGAGTGTCTGGAACACATATGCACTGAAGGGTGCACCGACGTTGGGCCTTACGGCGTGGAGCTCCGGAAAGAGAGGAGGCCGTGCGGCAAATACGCTACGTGTCATGGTATTCAGCTCTTAATCAAGCACTTCGCTACGTGTGATGAGAGGATGAACGGAGGGTGCTTACGCTGCAAGCGAATGTGGCAACTCTTCCGACTTCATTCCTACATTTGCCAGCAAACACATTCTTGCAAGGTTCCTCTTTGCAGGGAAATGCAAATGAGAATGCAGCAAGAGAAAAGGAAAGATGATGCAACGTGGAAACTACTGGCGAGGAAAGTGGCCTCTGCTAGAGTCATGTCTACACTCTCTTTGCCAAAGAGGAAGAGAGATGATGAAATCACAATAAGCATGGACAATTATGGGATCAGGAGTTTTAAATTAAAATGA	1086	0.5018	MAVNTIPPTDVPVVSTVGGIDYLSCRVLPEPDVFIHTSSGERIPAHTSILASVSPVLENIIDQPRRHRSSERVIQIHGVPCEAVTAFLGFLYCSRCTNEQMEKYGIHLLALSHVYLVPQLKQRCIKVLAERLTIENVVDLLQLARLCDAPDLYIKCMKLLTNHFKSVEATEGWKFLQKYDPWLELDILQFMDEDESRKKKSRKQREQLRLYAELSEAMECLEHICTEGCTDVGPYGVELRKERRPCGKYATCHGIQLLIKHFATCDERMNGGCLRCKRMWQLFRLHSYICQQTHSCKVPLCREMQMRMQQEKRKDDATWKLLARKVASARVMSTLSLPKRKRDDEITISMDNYGIRSFKLK	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele17g1109	361	SUPERFAMILY	TAZ domain	209	305	IPR035898	-
	Lele17g1109	361	Pfam	TAZ zinc finger	215	301	IPR000197	-
	Lele17g1109	361	PANTHER	BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED	30	342	IPR044513	-
	Lele17g1109	361	SMART	BTB_4	31	132	IPR000210	GO:0005515
	Lele17g1109	361	ProSiteProfiles	BTB domain profile.	31	100	IPR000210	GO:0005515
	Lele17g1109	361	Pfam	BTB/POZ domain	31	130	IPR000210	GO:0005515
	Lele17g1109	361	FunFam	BTB/POZ and TAZ domain-containing protein 2	203	330	-	-
	Lele17g1109	361	SMART	TAZ_2	207	302	IPR000197	-
	Lele17g1109	361	Gene3D	TAZ domain	203	329	IPR035898	-
	Lele17g1109	361	FunFam	BTB/POZ and TAZ domain-containing protein 2	133	203	-	-
	Lele17g1109	361	CDD	BACK	133	176	-	-
	Lele17g1109	361	SUPERFAMILY	POZ domain	32	162	IPR011333	-
	Lele17g1109	361	Gene3D	Potassium Channel Kv1.1; Chain A	29	132	IPR011333	-
	Lele17g1109	361	Gene3D	-	133	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele17g1109	Lele-ChrLele17	21400568	21403635	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	TAZ	Lele17g1109		BTB	9.2e-14	CL0033

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele21g1725	21	25109630	25112428	Lele17g1109	17	21400568	21403635	CCT
	Lele22g1700	22	22455403	22457833	Lele17g1109	17	21400568	21403635	CCT
	Lele23g0286	23	1956125	1958717	Lele17g1109	17	21400568	21403635	CCT
	Lele24g1669	24	22134929	22136841	Lele17g1109	17	21400568	21403635	CCT
	Lele17g1109	17	21400568	21403635	Lele19g0451	19	2596264	2599086	hybridization
	Lele17g1109	17	21400568	21403635	Lele20g1001	20	15954438	15957376	hybridization