Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1097 ATGTTCTTCTTCAACCCCATGTGCCATGTTCTTCTTCAACCCCTCTCTGCCACCGTCAGCAAAACCCTTCACCCTTCTCTATCCCTTACCCTTATCCTCAACTTCCCCCTTCCTTCTTCCTTCTTCCTTCTTCCTTCTGTACAGACTTCTCTGGCAATGGCAGCAGCATGCCTTCTTTCTTTGCCCTCCCCATTGTGCAACAAAACCAAACATCCCCATTTCTCAACAATTCCTTCTAAACCCCTTAAGCTTCAGCTCTCCTGCTCCAACTCTTCACTCTTTTTATCTTCTCCATCTCTCATCAGGAGAAGTCATTCTCCCTCTGTATTGACATTTGTAGCACAGACATCGGATTGGGCTCAGCAAGAAGCTGATGACACAGTTGCTGTTGGAGACGACGAACCCACGTGGGAAAATCAAGGGGTTGACAATACCGAAGCTGGCCACTGGGAGGCTGAGGGTAGTGAAGACGGGGAATACGTAGAACCTTCTGAAGATGCCAAAATGTATGTCGGTAACTTGCCTTATGATGTTGATAGCCAAAAATTAGCTATGCTATTTGAGCAAGCTGGAACTGTAGAAATTGCCGAGGTGATTTATAACAGGGAGACTGACCGAAGTCGTGGGTTTGGATTGAGCACAGTTGAAGAAGCCGAAAAGGCTGTAGAAAAGTTCGGCCGCTACAATCCACGTCGGCAACTTGCCGTCTATGTTGATAATGCTCGCCTGGAGCAAATGTTCATGGAACAGGGTACGGTCTTGAACGCTCGGATAGTTTATGACAGAGAGACCGGCCGATCACGTGGCTTTGGCTTCGTCACAATGGCCAGTGAGACTGAAATGAATGATGCTATTGCTGCTCTTGATGGTCAGGTGGTGCCGCCATTGCAGAGGGTGGATGGGAGAGCCATCAGAGTGAGTGCTGCTGAGGAAAGGACCAGGCGTGGCTCCTTCTGA 957 0.488 MFFFNPMCHVLLQPLSATVSKTLHPSLSLTLILNFPLPSSFFLLPSVQTSLAMAAACLLSLPSPLCNKTKHPHFSTIPSKPLKLQLSCSNSSLFLSSPSLIRRSHSPSVLTFVAQTSDWAQQEADDTVAVGDDEPTWENQGVDNTEAGHWEAEGSEDGEYVEPSEDAKMYVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDRSRGFGLSTVEEAEKAVEKFGRYNPRRQLAVYVDNARLEQMFMEQGTVLNARIVYDRETGRSRGFGFVTMASETEMNDAIAALDGQVVPPLQRVDGRAIRVSAAEERTRRGSF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1097 318 Gene3D - 113 234 IPR012677 -
Lele17g1097 318 SMART rrm1_1 235 307 IPR000504 GO:0003723
Lele17g1097 318 SMART rrm1_1 168 233 IPR000504 GO:0003723
Lele17g1097 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 167 311 IPR000504 GO:0003723
Lele17g1097 318 PANTHER OS02G0815200 PROTEIN 233 312 - -
Lele17g1097 318 SUPERFAMILY RNA-binding domain, RBD 234 315 IPR035979 GO:0003676
Lele17g1097 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 224 IPR000504 GO:0003723
Lele17g1097 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 234 293 IPR000504 GO:0003723
Lele17g1097 318 SUPERFAMILY RNA-binding domain, RBD 157 226 IPR035979 GO:0003676
Lele17g1097 318 Gene3D - 235 318 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1097 Lele-ChrLele17 21349604 21351549 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1097 167 315 Eukaryotic Initiation Factors Gene Family AT2G23350 25.967 8.98e-06 45.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1097 17 21349604 21351549 Lele20g0991 20 15891056 15893033 hybridization