Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1087 ATGCTGCAGGATTCGTCCCAACAAGACTTTGATGACTCTGATTCTGAACTTGTAGAGATTGATCCCACCGGTCGATATGGGTTGTTTCTTTTGCGTGGGAGATGGTTTGTTCCTTTTAATGACGAAAGATATCGTGCTTTCGATGAGTTGGAAGGAATTGTAAGTTGCATGGAACGCCTTTATTCAGAAGTTCATCTGCTCAAGACTTTAAAGCACAAAAATGTCATCACATTTTATAATTCATGGTTTGATCCAGAGCATGGCAACATCAACTTCATTACTGAAATATTTACTTCAGGAACATTACGCCAATATAGGAAGAAACACAAGCGTGTTGACTTGAAAGCCTTAAAGAAATGGTCCAGGCAGATTTTGGAGGGGCTTTTCTATCTTCACAGTCATGATCCACCAATTATTCATCGAGATCTTAAGTGTGACAACATCTTTGTCAACGGAAATCAAGGTGAGGTGAAAATTGGTGACTTGGGATTTGCAGTCATTCTTCAGCAACCCAATTCAGCTCATAGTGTCATAGGTACTCAAGAGTTTATGGCGCCGGAGCTGTATGAAGAGGAATACAATGAGCTTGTTGACATTTATGCTTTTGGCATGTGCTTGCTAGAATTGGTCACCTTTGAGTACCCTTACGTTGAATGTGCAAATGCCGCTCAAATATACAAGAAGGTGATATCTGGAGTAAAGCCAGCATCTTTGGCAAAAGTGACAGATACTGGGGTGAAAGCATTTATAGGAAAGTGTATTGCAAATGTATCTGAATGGTTACTTGCTAAGGATCTCTTAATGGATTCGTTTCTTCATTTAGAAGAAGATGATGAGAATATAGGTCATTTTTTAAGGCCTAAAATTTGCCATTCAAAGACAAGTACGGAATTTAGAGTGGAAGGTCAATGGAGAGATGTTAATACAATATTTCTGAAACTAAGACTAGTAGACTCCTCAGGTCATATTAGCAATATCCACTTTCCTTTTAATATTGAGGTAGACACTGCAGTTGGGGTTGCTAGTGAAAAGGTCGAGGAGCTTGAGCTCTCTGATCAAGATGTCACAACCACTGCTGAGATGATTGAATCAGAAATTCAATACCACTTTCCAGTTTCAAGAAGATGTGCCTCTACCTCTTTTATTGGTAGTTTCGCATCAGAAAGATTACCTTCAGTGAATGTGGGCACTGAGGAAAGTAACTTGACTGGAAATGATGCTGCCCCAGTTCATCAGCAGGCTAAGAACGGTGTTGATGATGATGGTTGGAGTTCAGGAAAGAAATCTAGTGGGATTGCTGATTTTCATTCAATTGAGAGAAGGATTACATCTAAGGATTCTAAAGTCTCATCCTCATCAAGAAAGCTCAGAACCTTGCGATGTGAGGTCCAATTTTGTTCTGCCACAGATAACAAAATCCTGAAATCATCACCCCCTTCTCCTCTATCCCCTCACACCACTCTCTCTTCTCTCCCTCTCAAGGATTCTCCAATGGCGATTTCTTCAGCCACAGCTTCTGCTTCCTCCAAGCTCATATTCCTTCATTCCTCTCCTTCTTCCTCCTCCTCCTCTTCCCCCACACTCTCTCTAAACCCCCACAAACTCACATCCCCCACATCCCATCTCTCCTCTTCCTTCATTAACCCCTCCACAATCCTCCACCTTTCTCCCTCCTCCACCTCCTCCGCCACCACTAGCCACCGCTCCTTCACAATCCGAGCTGCTCGTGGCAAGTTCGAGAGGAAGAAACCCCATGTCAATATCGGCACCATTGGCCACGTCGACCACGGCAAGACCACTCTCACTGCTGCTCTCACCATGGCCTTAGCGGCTCTGGGAAACAGTGCCCCAAAGAAATATGACGAAATTGACGCTGCCCCTGAAGAGCGAGCTCGTGGAATCACCATTAATACTGCCACTGTCGAGTATGAGACTGAGAATCGCCATTACGCCCACGTCGACTGTCCCGGCCACGCCGATTACGTCAAGAACATGATTACTGGTGCTGCTCAGATGGACGGCGCTATTCTTGTCGTTTCGGGCGCCGACGGTCCAATGCCGCAGACTAAGGAGCACATACTTTTGGCCAAGCAAGTCGGGGTCCCAAATATGGTCGTGTTTCTAAACAAGCAAGATCAGGTTGATGACGAGGAGCTTCTGCAGCTCGTGGAATTGGAGGTTCGTGAGCTTCTTTCGTCTTATGAATTCCCTGGTGATGAAGTCCCCATTATTTCTGGTTCTGCTCTGCTAGCTTTGGAGGCATTGATGGCGAATCCCACCATTAAACGAGGAGAAAACCAATGGGTCGACAAAATTTACGAACTCATGGATTCTGTGGATAGCTACATCCCAATTCCTCAGCGTCAAACTGATCTTCCTTTCTTGCTGGCCATTGAAGACGTGTTCTCAATCACAGGTCGTGGAACTGTGGCCACAGGCCGTGTCGAGAGAGGCACAATTAAGGTTGGAGACACTGTAGATATTGTTGGGGTAAGGGAAACAAGAAACACAACCGTGACTGGTGTAGAAATGTTCCAGAAAATTCTTGATGATGCCATGGCTGGGGATAACGTGGGGTTGTTGTTGAGAGGTATCCAGAAGGTTGATATTCAGAGAGGGATGGTTTTGGCTAAGCCAGGCACCATTACTCCACACACCAAGTTCGAAGCTATTGTTTATGTCCTGAAGAAGGAAGAAGGAGGAAGGCACTCACCATTCTTTGCAGGCTACAGGCCACAGTTCTACATGAGGACCACTGATGTTACTGGAAAAGTGACAGCCATAATGAATGATAAGGATGAAGAATCAAAGATGGTTATGCCAGGAGATCGTGTGAAGATGGTTGTTGAACTTATAGTGCCAGTGGCTTGTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACTGTTGGAGCTGGTGTCATTCAATCCATCATTGAGTGA 2949 0.4476 MLQDSSQQDFDDSDSELVEIDPTGRYGLFLLRGRWFVPFNDERYRAFDELEGIVSCMERLYSEVHLLKTLKHKNVITFYNSWFDPEHGNINFITEIFTSGTLRQYRKKHKRVDLKALKKWSRQILEGLFYLHSHDPPIIHRDLKCDNIFVNGNQGEVKIGDLGFAVILQQPNSAHSVIGTQEFMAPELYEEEYNELVDIYAFGMCLLELVTFEYPYVECANAAQIYKKVISGVKPASLAKVTDTGVKAFIGKCIANVSEWLLAKDLLMDSFLHLEEDDENIGHFLRPKICHSKTSTEFRVEGQWRDVNTIFLKLRLVDSSGHISNIHFPFNIEVDTAVGVASEKVEELELSDQDVTTTAEMIESEIQYHFPVSRRCASTSFIGSFASERLPSVNVGTEESNLTGNDAAPVHQQAKNGVDDDGWSSGKKSSGIADFHSIERRITSKDSKVSSSSRKLRTLRCEVQFCSATDNKILKSSPPSPLSPHTTLSSLPLKDSPMAISSATASASSKLIFLHSSPSSSSSSSPTLSLNPHKLTSPTSHLSSSFINPSTILHLSPSSTSSATTSHRSFTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDEVPIISGSALLALEALMANPTIKRGENQWVDKIYELMDSVDSYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRVERGTIKVGDTVDIVGVRETRNTTVTGVEMFQKILDDAMAGDNVGLLLRGIQKVDIQRGMVLAKPGTITPHTKFEAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTAIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAIREGGKTVGAGVIQSIIE 982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1087 982 FunFam Elongation factor Tu 574 786 - -
Lele17g1087 982 CDD EF_Tu 584 786 IPR041709 -
Lele17g1087 982 ProSiteProfiles Protein kinase domain profile. 15 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1087 982 SMART serkin_6 39 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1087 982 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 881 981 IPR009001 -
Lele17g1087 982 MobiDBLite consensus disorder prediction 520 542 - -
Lele17g1087 982 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 581 809 IPR027417 -
Lele17g1087 982 FunFam Elongation factor Tu 921 981 - -
Lele17g1087 982 CDD EFTU_III 883 977 - -
Lele17g1087 982 ProSitePatterns Serine/Threonine protein kinases active-site signature. 138 150 IPR008271 GO:0004672|GO:0006468
Lele17g1087 982 Pfam Protein kinase domain 58 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1087 982 FunFam probable serine/threonine-protein kinase WNK9 97 278 - -
Lele17g1087 982 Gene3D - 575 786 IPR027417 -
Lele17g1087 982 SUPERFAMILY Translation proteins 788 884 IPR009000 -
Lele17g1087 982 Hamap Elongation factor Tu [tuf]. 574 982 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele17g1087 982 CDD EFTU_II 794 880 IPR033720 -
Lele17g1087 982 Pfam Elongation factor Tu C-terminal domain 881 980 IPR004160 -
Lele17g1087 982 Gene3D Translation factors 789 917 - -
Lele17g1087 982 Gene3D Translation factors 921 981 - -
Lele17g1087 982 Pfam Elongation factor Tu GTP binding domain 583 784 IPR000795 GO:0003924|GO:0005525
Lele17g1087 982 Gene3D Transferase(Phosphotransferase) domain 1 97 273 - -
Lele17g1087 982 FunFam Elongation factor Tu 789 917 - -
Lele17g1087 982 TIGRFAM EF-Tu: translation elongation factor Tu 575 982 IPR004541 GO:0003746|GO:0005525|GO:0006414
Lele17g1087 982 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 456 - -
Lele17g1087 982 Pfam Elongation factor Tu domain 2 808 876 IPR004161 GO:0005525
Lele17g1087 982 MobiDBLite consensus disorder prediction 474 493 - -
Lele17g1087 982 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 624 639 IPR031157 -
Lele17g1087 982 Gene3D Phosphorylase Kinase; domain 1 11 95 - -
Lele17g1087 982 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 583 787 IPR000795 GO:0003924|GO:0005525
Lele17g1087 982 SUPERFAMILY Protein kinase-like (PK-like) 56 542 IPR011009 -
Lele17g1087 982 PRINTS GTP-binding elongation factor signature 631 639 IPR000795 GO:0003924|GO:0005525
Lele17g1087 982 PRINTS GTP-binding elongation factor signature 651 661 IPR000795 GO:0003924|GO:0005525
Lele17g1087 982 PRINTS GTP-binding elongation factor signature 587 600 IPR000795 GO:0003924|GO:0005525
Lele17g1087 982 PRINTS GTP-binding elongation factor signature 667 678 IPR000795 GO:0003924|GO:0005525
Lele17g1087 982 PRINTS GTP-binding elongation factor signature 704 713 IPR000795 GO:0003924|GO:0005525
Lele17g1087 982 TIGRFAM small_GTP: small GTP-binding protein domain 586 718 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1087 Lele-ChrLele17 21307545 21312448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1087 90 371 MAP Kinase Kinase Kinase AT3G48260 68.259 2.92e-131 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Lele17g1087 GTP_EFTU 6.1e-55 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1087 17 21307545 21312448 Lele21g1746 21 25249584 25251657 CCT
Lele17g1087 17 21307545 21312448 Lele23g0263 23 1806059 1807878 CCT
Lele17g1087 17 21307545 21312448 Lele24g1687 24 22236593 22237970 CCT
Lele17g1087 17 21307545 21312448 Lele19g0472 19 2681248 2686046 hybridization
Lele17g1087 17 21307545 21312448 Lele20g0981 20 15846733 15848181 hybridization