Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1084 ATGGAGGTTACCCGGCAAAATCTCCTAGTCGACGAAATATCCGAACAAAATGGTGTCACCGCCCAAGACCCAGCTCCTTCTCACATGCTTTCTGAAGAGAAGTTTATCGTCTCTGTCGAAGTATGTTTGAAACCTTCAAGTACAGCTCGGATTGCGGATGTCCGTTCAGCCATCGAGAGGATGCTCGAGAACAGGTGTTTGAGCTATATTGATGGACCCACTCCTCTGCCTCTTGATGACACGTTTCTTTCAGAAAACGTGCAAAGAATCTGTATTTGTGATACTGATGAGTCAACGGGCAATCATAGCATTCTTTTGTTCTGGCAAGTCAAGCCTGATGTGCATGTCTTTCAGCTTAGTGAAGAAGGACCATGCGAGGAAATAAGTACTGATGGCCAACCTTCTAGCTTCAATGAATGGATTCTTCCAGCAAAAGAATTTGATGGCATGTGGGAAAGCTTAATATATGAATCTGGTCTCAAGCAAAGATTATTAAGATATGCAGCGAGCGCTTTGCTTTTTACTGAAAAGGGCGTTGATCCATTTCTGGTTTCATGGAACCGCATTGTTCTCTTACATGGACCTCCTGGGACTGGAAAGACATCTTTATGTAAAGCATTGGCACAAAAACTATCCATTCGATTCAATCAAAGATACCCCCAGTGTCAGCTGATTGAAGTTAATGCACACTCTTTGTTCAGTAAATGGTTCTCTGAAAGTGGCAAGCTGGTTGCGAAGCTTTTCCAAAAGATTCAAGAAATGGTAGAGGAAGAAAACAATCTGGTATTTGTTTTGATTGATGAAGTCGAAAGCCTTGCTGCTGCCAGAAAAGCTGCTTTATCTGGTTCTGAACCTTCAGACTCTATTCGGGTTGTCAATGCATTGTTAACTCAGATGGACAAGTTAAAATCTTCTCCAAATGTGATAATTCTAACTACGTCCAACATAACTGCTGCTATCGATATTGCTTTTGTTGATCGAGCTGATATCAAAGCATATGTTGGTCCTCCAACTCTCCAAGCTCGCTATGAAATTCTAAGATCGTGCTTGGAGGAATTGATGCGCACAGGGATCTTGACAAGTTTACAGGATTGTATGAACATTAAGCTTCCAAATTATGCTAATGCTAAGGAAAAGTTGAACGCACCTGAGAATCATGAAGCCGCTCAACTATGTAAACAATTACTTGAAACTGCGGAGGCATGTGAGGGAATGAGCGGAAGGTCTTTGAGAAAGCTTCCATTCTTGGCACATGCTGCCCTCGCCAATCCTTCAGAATGCAACCCATTTAAATTCTTATGTACAATGATAGAAACAGCGAAGAGGGAGCGCTCTGAGCTTCCCGACTGA 1350 0.4244 MEVTRQNLLVDEISEQNGVTAQDPAPSHMLSEEKFIVSVEVCLKPSSTARIADVRSAIERMLENRCLSYIDGPTPLPLDDTFLSENVQRICICDTDESTGNHSILLFWQVKPDVHVFQLSEEGPCEEISTDGQPSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPPGTGKTSLCKALAQKLSIRFNQRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEENNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLEELMRTGILTSLQDCMNIKLPNYANAKEKLNAPENHEAAQLCKQLLETAEACEGMSGRSLRKLPFLAHAALANPSECNPFKFLCTMIETAKRERSELPD 449
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1084 449 FunFam pachytene checkpoint protein 2 homolog 130 352 - -
Lele17g1084 449 Pfam ATPase family associated with various cellular activities (AAA) 190 335 IPR003959 GO:0005524|GO:0016887
Lele17g1084 449 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 304 318 IPR001270 GO:0005524
Lele17g1084 449 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 190 208 IPR001270 GO:0005524
Lele17g1084 449 ProSitePatterns AAA-protein family signature. 308 327 IPR003960 GO:0005524|GO:0016887
Lele17g1084 449 Gene3D - 133 353 IPR027417 -
Lele17g1084 449 CDD AAA 188 336 - -
Lele17g1084 449 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 25 446 IPR044539 -
Lele17g1084 449 SMART AAA_5 186 338 IPR003593 -
Lele17g1084 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 418 IPR027417 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele17g1084 Lele-ChrLele17 21291879 21296665 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1084 190 363 Calmodulin-binding Proteins AT3G56690 29.545 3.06e-13 70.1
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1084 17 21291879 21296665 Lele19g0477 19 2697387 2703454 hybridization
Lele17g1084 17 21291879 21296665 Lele20g0978 20 15830411 15835045 hybridization