Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1079 ATGCAGTTCAAACCCAGAAATCAAGAACGCATCACTATCAAGTTCCTTTGTAGCTATGGCGGCAAGATTCTTCCTCGGGCCACGGATGGCAAGCTCCGCTTTGTCGGCGGTCACACCAGAGTCCTCGCCGTCGATCCTTCTATTGCCTTTTCAGAGCTGATGGCGAAGCTCGAAGAATTGTCTGGTTCGTCCGTGACGTTGAGATGTCCATTGCCCAACGGAGACTTGGAGACGCTGATTTCGATAACCGACGACGAAGATCTGGCCCATATAATTGAGGAATATGATCGATCTTCGTCATCATTAGCTCATCCGCTGAAGATCAGAGCCATTCTTTCGCCGCTGAAATCACTCAAGAAAATATCTCCTGCATCCTCGTCTGCTTCTAGCGCGAATCGATCTCCGTCCAGATCACTCCACTCCTCCATCGAGTCCCTGCCTTATTCGGTGGCCTATCGCTTTATCTGCCACAACTGCTCACCGCCCATTGGATATCCAATCGGTGTCCGTAGCGGGAGCCCTAGGTCTTGGTACGGTGGTTCCAACCGCAGCAATTACTACGTTTTCTTGGTAGAGTGTGTGAGGGTTCAGCAGCTGACTTTAACAAGAACTGGACAAAGTAAGCGTCAAAAGAGGAACATTGTTGTCCAGGGACTGGGGAATAGAGAAGAGAAATGTAAGAATGGAATAAAGTCAGTCCTTAATCTTGTCCTATGGGATGGCAACGAAAAGCCTTTCAAAGGGATGGATAAGCGAAGGGACTATTATGAAGCAAGTTTAGTCCTTTTGGTGATTCAGTTGGCGCTTTAG 810 0.4852 MQFKPRNQERITIKFLCSYGGKILPRATDGKLRFVGGHTRVLAVDPSIAFSELMAKLEELSGSSVTLRCPLPNGDLETLISITDDEDLAHIIEEYDRSSSSLAHPLKIRAILSPLKSLKKISPASSSASSANRSPSRSLHSSIESLPYSVAYRFICHNCSPPIGYPIGVRSGSPRSWYGGSNRSNYYVFLVECVRVQQLTLTRTGQSKRQKRNIVVQGLGNREEKCKNGIKSVLNLVLWDGNEKPFKGMDKRRDYYEASLVLLVIQLAL 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1079 269 CDD PB1_UP2 16 112 - -
Lele17g1079 269 Gene3D - 31 111 - -
Lele17g1079 269 PANTHER OS05G0427100 PROTEIN-RELATED 12 139 - -
Lele17g1079 269 SUPERFAMILY CAD & PB1 domains 29 115 - -
Lele17g1079 269 SMART PB1_new 27 115 IPR000270 GO:0005515
Lele17g1079 269 Pfam PB1 domain 28 100 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1079 Lele-ChrLele17 21274428 21276068 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1079 7 100 MAP Kinase Kinase Kinase AT5G57610 45.745 2.39e-23 97.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1752 21 25275530 25276832 Lele17g1079 17 21274428 21276068 CCT
Lele22g1727 22 22624742 22625182 Lele17g1079 17 21274428 21276068 CCT
Lele23g0255 23 1777958 1778287 Lele17g1079 17 21274428 21276068 CCT
Lele24g1693 24 22284997 22285437 Lele17g1079 17 21274428 21276068 CCT
Lele17g1079 17 21274428 21276068 Lele19g0482 19 2717713 2719348 hybridization
Lele17g1079 17 21274428 21276068 Lele20g0974 20 15814252 15814916 hybridization