Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1067 ATGGATATCAACATAGGAGGGCAAGTAGAGAAGGTAAATGGAAAAGAATTGACTTATCGGGAATTTGTGAACCGCTACATGGAGAAGAACCTTCCCGTGGTGCTCACGGGACTCATGGACGATTGGAGGTCTTGCAGAGACTGGGTCACCATTAATGGCCAACCCAACCTTCAGTTTTTTTCTTCCCATTTTGGGAGTTCTAAAGTTCAGGTTGCAGACTGTGGCACTAGAGAATTCACAGATCAGAGAAGGGAGGAGATGCGTGTTTCAGATTTTATAAGGCGTTGGCTAGAGGGTTCTACAGTACAGCCTAATACTGAAAATCATAATAGGAATGGTCATGGATCCGTACTGTATTTGAAGGATTGGCACTTTGTAAAGGAGTATCCAGAGTATTTAGCGTACATCACACCAATGTTCTTTCATGATGACTGGCTCAACCTCTATCTCGACTACTACAAAATGCATACAGATCCCGATAGTCACCAACAAAATAATGAAATATGTTGCTCTGACTATCGTTTTGTTTACATGGGGGTAAAAGGATCTTGGACTCCTCTTCATGCTGATGTATTCAGGTCATATAGCTGGTCTTCAAATGTCTGTGGGAAGAAGAGATGGCTTTTTCTAGCACCTCCTCAGTGTCATCTTGTATTTGACAGGAATGTGAAAAATTGTGTGTATGATATCTTTGCTGAAGTAAGTGAATCAACATTTCCTGGATTTAAAAAGACTGTCTGGTTAGAATGCACGCAAGAAGCAGGTGAAATTATTTTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATCTGGAGGATACTATATCTATAAACCACAACTGGTTCAATGCTTATAACCTTTCTTGGGTGTGGAACTTACTTTTGAGGGACTACAATGAGGCCAAGGAATATATTGAGGACATCAAGGATATATGTGATGATTTTGAGGGTCTCTGCCAGCGCAATCTTTTTGCTAACACAGGGATGAACTTTTATGACTTCTTTACTTTCCTAACATGCTTTACCCTGGCCAACTTAGCGTTGCTTTGCTATCTAAGTGGAAAATATGGAAGCCCCCCTGAAGGCTCACTGACAATGAATCAACATTTAGTTTTCAATCTTGGATCAGTGAGGAAGGTTGCATTGGAGATGAAAAGCATTCATGCTCTTGAAGGAAATCATGACTACTTCCTGGACATTATCAAAACATCTGAAGATCCTAGGTTTTCTAAGTCGTGTGAGCGTTTGAGAAGAACATATGTGTCAATACATGAGGAACCTTACATGTCTTCTGAATTTGAGAAATCCGCTGTTGATTATCTGATGGGCCTTAATGTTTTGAAAGCATGTTCTTCTTCTCGAATCCACACACCTGAAGACCTCATTAAACTCATAGACAATGCTGTTTCAGAACTTGGTGACAATTACAATCAGCAGCTGTCAGCAGTACATAAGTTCATTGCCACCTTGATTCCTGGGTTTTATGCGCCATTACTGGAGTTCATCAGGAAACCCACCATCGTCTCATGA 1530 0.4078 MDINIGGQVEKVNGKELTYREFVNRYMEKNLPVVLTGLMDDWRSCRDWVTINGQPNLQFFSSHFGSSKVQVADCGTREFTDQRREEMRVSDFIRRWLEGSTVQPNTENHNRNGHGSVLYLKDWHFVKEYPEYLAYITPMFFHDDWLNLYLDYYKMHTDPDSHQQNNEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSSNVCGKKRWLFLAPPQCHLVFDRNVKNCVYDIFAEVSESTFPGFKKTVWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFEGLCQRNLFANTGMNFYDFFTFLTCFTLANLALLCYLSGKYGSPPEGSLTMNQHLVFNLGSVRKVALEMKSIHALEGNHDYFLDIIKTSEDPRFSKSCERLRRTYVSIHEEPYMSSEFEKSAVDYLMGLNVLKACSSSRIHTPEDLIKLIDNAVSELGDNYNQQLSAVHKFIATLIPGFYAPLLEFIRKPTIVS 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1067 509 FunFam JmjC domain-containing protein 4 3 283 - -
Lele17g1067 509 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 10 330 - -
Lele17g1067 509 SMART cupin_9 118 298 IPR003347 -
Lele17g1067 509 SUPERFAMILY Clavaminate synthase-like 6 310 - -
Lele17g1067 509 Gene3D Cupin 2 282 - -
Lele17g1067 509 Pfam Cupin-like domain 21 281 IPR041667 -
Lele17g1067 509 ProSiteProfiles JmjC domain profile. 126 298 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1067 Lele-ChrLele17 21192355 21196060 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1067 7 290 Glycosyltransferase AT1G78280 25.000 2.82e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Lele17g1067 Cupin_8 7.6e-22 CL0029
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1067 17 21192355 21196060 Lele19g0493 19 2802120 2807773 hybridization
Lele17g1067 17 21192355 21196060 Lele20g0962 20 15715571 15719014 hybridization