Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1048 ATGGATCTTCACACAAATCTCAGAGATAACACTTACATTACCTCATCACAGCCAATAATGCATCTTCAAGAAACTTACCAGCTGAGGCCTAATATGATGAAATTAGATGAATCTCCTTTTGGGGTTCCTAATTCATCATCGCAGGGTTTCTTGCAAGATTTTAATGACCACGTTGATCATAATCATCATAATCAGTTTCATCAACTTAATGGGTCTTCTTCATTATCCAACCCATCATCATCAGCTTTTGGGATCCATGCTTTGATGAGTTTTGATTCTTTTGATGATTTTGATGTTGAGTGCAAGCCTTTTGTTGAGATCAATAATGCTCATCAGGTTTTGGATAATTTCCAATATGGATCAGCTAATTGTAGCTTGAACGTCGTACCTCAGAGAAATCAAGTCAACAACATGAACCAAACCTATGTGATGCCTTTCAGTAATTCTGAGGAAATTATAAAGCCTGTGAATTTTGTTGTGCCTGATGAACTCTCGTGCATATCCCCTTCTGTGAATTATCACAGAAAAGTTGGCTTCAATAAGAAAAGTAATAGGGTTTCATCATCATCATCATCTCTAACCACTAGAAGGAAGAGTTACAGACTTCGAAAGAAATCCAACGCTGTAAAGGGCCAATGGACCATAGAAGAAGATAGGTTGTTGATTCAGATGGTGGAACAATATGGAGTGAGAAAGTGGTCTCATATTGCTCAGATGTTGCCAGGAAGAATAGGCAAACAGTGCAGAGAGAGATGGCATAATCATCTAAGACCTGACATTAAGAAGGAGACATGGACGGAAGAAGAAGACAAGATACTGATAGAAGCTCATGGAGAGATAGGGAACAAATGGGCAGAGATAGCAAAGAGATTGCTTGGAAGAACAGAAAACTCCATAAAGAACCATTGGAATGCCACAAAGAGAAGACAATATTCAAAGAGAAAATGTCGCTCAAAGCACCCAAGACCCTCTCTTCTTCAAGAATACATCAAAAGCTTGAACTTAGACCAAAACCCTCCATTAGACTATCGCAAAAGATCATCATCATCTGCTGCCAACAACACTGACACAATCATAAGAGAATCTGAATTGGTTCCGAATTATGGGTTTAAGGAGGCTGAAGAGTTTTGCTTTGACGAGAGCTTGCTTCGAGAAGGTGGCTGCAGAACTCTTGATTCTGTGCTAAATGATGAAGATGATGATGATGATGACAAGTTTGAAGATGATGTGGATTTGGTGGAGATGATGTCTCAGGTCAATCAAGCTATTATTGATATGTAA 1281 0.3888 MDLHTNLRDNTYITSSQPIMHLQETYQLRPNMMKLDESPFGVPNSSSQGFLQDFNDHVDHNHHNQFHQLNGSSSLSNPSSSAFGIHALMSFDSFDDFDVECKPFVEINNAHQVLDNFQYGSANCSLNVVPQRNQVNNMNQTYVMPFSNSEEIIKPVNFVVPDELSCISPSVNYHRKVGFNKKSNRVSSSSSSLTTRRKSYRLRKKSNAVKGQWTIEEDRLLIQMVEQYGVRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKETWTEEEDKILIEAHGEIGNKWAEIAKRLLGRTENSIKNHWNATKRRQYSKRKCRSKHPRPSLLQEYIKSLNLDQNPPLDYRKRSSSSAANNTDTIIRESELVPNYGFKEAEEFCFDESLLREGGCRTLDSVLNDEDDDDDDKFEDDVDLVEMMSQVNQAIIDM 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1048 426 CDD SANT 213 256 IPR001005 -
Lele17g1048 426 Pfam Myb-like DNA-binding domain 210 256 IPR001005 -
Lele17g1048 426 Pfam Myb-like DNA-binding domain 262 304 IPR001005 -
Lele17g1048 426 FunFam Transcription factor MYB119 263 327 - -
Lele17g1048 426 SMART sant 261 309 IPR001005 -
Lele17g1048 426 SMART sant 209 258 IPR001005 -
Lele17g1048 426 SUPERFAMILY Homeodomain-like 208 303 IPR009057 -
Lele17g1048 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 205 260 IPR017930 -
Lele17g1048 426 PANTHER MYB PROTEIN-RELATED 199 342 - -
Lele17g1048 426 ProSiteProfiles Myb-like domain profile. 205 256 IPR001005 -
Lele17g1048 426 Gene3D - 263 328 - -
Lele17g1048 426 ProSiteProfiles Myb-like domain profile. 257 307 IPR001005 -
Lele17g1048 426 Gene3D - 209 261 - -
Lele17g1048 426 FunFam Transcriptional activator Myb isoform A 209 262 - -
Lele17g1048 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 261 311 IPR017930 -
Lele17g1048 426 CDD SANT 264 307 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1048 Lele-ChrLele17 21082237 21083872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1048 130 406 MYB Transcription Factor Family AT4G18770 54.795 3.05e-97 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele17g1048 Myb_DNA-binding 2.6e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele17g1048 17 21082237 21083872 Lele19g0509 19 2914467 2916124 hybridization
Lele17g1048 17 21082237 21083872 Lele20g0946 20 15615441 15617152 hybridization