LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele17g1032	ATGCGAGGAATCGCTCGTTGTCAGATGATAAAAGAAGACAACAAGGATGGGCGTAAGTTTTCAATTTCAGCTTCAAGGAGGGAAAAAGAAATAAGAGGAGACATGGAAACAATAATTAGAGAGAATCTTAGTGAAATGAGGTTAGCTGCGAGGAAGAAGACGAAACAGTGGTAGCATCACCTTCAAGCAGCAGTATCAATGGAAGGTGGTGGGCTACATGAATATAAGAAGGGGCTGTGGAATTCTCAGGAAGACAAGATCTTAATGGAGTACGTGAAGCAGCATGGAGTGGGCAAGTGGAACCGTATCTCTAAAGTCACAGGATTGAAGAGATGTGGCAAAAGTTGCAGGCTGAGGTGGATGAACTACCTGAGTCCGAATGTGAAGCGTGGAGATTTCTCAGAAGAAGAAGACGACCTCATTATTCGCCTCCACAATCTCCTTGGAAATAGGTGGTCACTGATAGCAGGGAGGGTGCCAGGGAGGACAGACAACCAAGTGAAGAACTACTGGAACACTCGTTTGAGCAAAAAGTTGGGTGTTAATAAAAAGGGAAAGAGCAAAGTGTGTAAACCTGCGAAGCCACCCTCTATTGAATTTAACCACGTGGCTTCTAACAATGGGTCAAATCCTTTTAAGAGGGCTTCAAACTGTAGCCAAGAGGGTGAGATTGAGAAGTTCCTCCAAGATAATTCTTTATTAAGCAAGGAGATTATTATGAGTGATGATGATTTTGAGACCACCTTCTTGTTAGCTAACAGTGGAATTGGCCTTTATGATCCTTCCTCCTTCACTGAGCCTTTCCAAGACTACTTTATTGACCTTGATTGGCCTTCCTTGTGA	843	0.4342	MRGIARCQMIKEDNKDGRKFSISASRREKEIRGDMETIIRENLSEMRLAARKKTKQWXHHLQAAVSMEGGGLHEYKKGLWNSQEDKILMEYVKQHGVGKWNRISKVTGLKRCGKSCRLRWMNYLSPNVKRGDFSEEEDDLIIRLHNLLGNRWSLIAGRVPGRTDNQVKNYWNTRLSKKLGVNKKGKSKVCKPAKPPSIEFNHVASNNGSNPFKRASNCSQEGEIEKFLQDNSLLSKEIIMSDDDFETTFLLANSGIGLYDPSSFTEPFQDYFIDLDWPSL	280

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele17g1032	280	ProSiteProfiles	Myb-like domain profile.	125	175	IPR001005	-
	Lele17g1032	280	Gene3D	-	131	197	-	-
	Lele17g1032	280	Pfam	Myb-like DNA-binding domain	77	124	IPR001005	-
	Lele17g1032	280	Pfam	Myb-like DNA-binding domain	130	173	IPR001005	-
	Lele17g1032	280	CDD	SANT	133	175	IPR001005	-
	Lele17g1032	280	CDD	SANT	80	124	IPR001005	-
	Lele17g1032	280	SMART	sant	129	177	IPR001005	-
	Lele17g1032	280	SMART	sant	76	126	IPR001005	-
	Lele17g1032	280	ProSiteProfiles	Myb-like domain profile.	72	124	IPR001005	-
	Lele17g1032	280	Gene3D	-	77	129	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele17g1032	Lele-ChrLele17	20972872	20974203	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele17g1032	70	207	MYB Transcription Factor Family	AT5G40330	67.857	9.24e-66	203

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Lele17g1032		Myb_DNA-binding	7.4e-15	CL0123

Showing 1 to 1 of 1 entries