Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1031 ATGATGAAGAACTTTCACAGCTTCAAACAGATTCCAACCCCCAATAGGTCGGCAAGGAGGCTTTCGCTTGGGGAATACAAGCGAGCTTTGTCATGGTCCAAGTACTTAGTCTCTTCGGGTGCTGCCATTAAAGGAGAAGGAGAAGAAGAATGGAGTGCCGATCTGTCTCAGTTATTCATTGGATCCAAATTTGCTTCTGGAAGACACAGTAAGCTCTACAGAGGCATTTACAAGCAAAACGATGTCGCCATCAAGCTCATCAGCCAACCTGAGGAAGATGCCAACTTGGCTTCTGAGGTTGAAAAGCAATTCACTTCTGAAGTTGCTTTGCTCTTTCGTTTGCACCACCCAAACATCATCACTTTTTTTGCTGCTTGCAAGAAGCCACCTGTGTTCTGTATAATTACTGAATATATGGCCGGAGGATCCCTGAGAGGCTATCTTCATCAGCAACAACCATATTCAGTTCCACTTAATCTGGTTCTGAAATTAGCCCTAGACATTGCAAGAGGGATGCAGTATCTTCATGCTAAGGGGGTTCTTCATAGGGATCTTAAATCAGAGAACCTATTGCTTGGGGAAGATATGTGTGTAAAAGTAGCAGATTTTGGAATCTCATGTTTAGAATCACAGATTGGTAGTGCAAAAGGATTCACAGGAACTTACCGCTGGATGGCACCTGAAATGATCAAAGAAAAACATCATACCAAGAAAGTAGATGTTTATAGCTTCGCCATAGTCCTATGGGAGCTCTTAACTGGACTGACTCCATTCCACAACATGACACCAGAACAAGCAGCTTTTGCAGTCTCACACAAGAATGAGAGGCCGCCATTGCCAGCTGATTGTCCAAAGGCATTTAGTCATCTGATAAACAGATGCTGGTCAAGCAACCCAGATAAAAGGCCGGATTTTGATGAGATTGTTTCTATTTTGGAGATGTATAGTGAATCCCTTGAAGAAGATCCTGAGTTCTTCTCAACTTACAAACCACCTTCTTCTAATTCTCTTCTCACGAGATTCTTACCAAAATTTAGGTTGGTGAGCTCATTGCCATGGCTGGTTATTAAGATTAGCTGTTTGGTATTGGTTCTCACTGTGAATTTGGTTTCTGAAGAAGTAAAGATGCCAGGAATCCTTACAAATGGGTTTGAACATAATGAAAGAGCGAATGAAATGAACGGAAATCCTTCACCTTGTAAGGAAACCGCCTCTCCAATCAAGCCCCAAAGGAGTTCCTTTAGTTCACAAAGTCCTCAGAACACAGGTTCAAATGCACCTGCTCTACCTGTTGACACATCAATCGAGCAGCTTTATGAAAATGTCTGTGACATGGAAAGTTCTGATCACTCACCTTCCAGACAAAGTCTCGGATCTGATGGCGATGATGAGTCTGGGATCGATTCAGAATTGTGCCATCTAGTTGGAGGACCGATGAGGGAAGTGGAAATAATGGAAGAGGAAGTGGCAGAGAGGTCGAGAGGTGATTCAGTTAGTGAAACATCGTCTGGAAAAGAAACATCCGCGAATGGTGAGAAGTTAGTACAGGGGGATGAGAAGATTCAATGTGAGAAGTCCGTACCGGAGGATGAGAAGATTCAATGTGAGATGTTGGTACAGGCTGATGAGAAGATTCAATCTGCTAGTACAAGTTCTGCTTCTTCAGAAAATTCAAATGAAGTGTCAAACTCACAGGTGGACCTTGTCCCTGAAACACCGCCAAAGTCGAAACCCAAGGGAAAAGGTCCTCCCACAAAGCCTCCTACTGATAAGAGGAATGATAAACCTCTGAGAAAACAAAATAATGGATCTACTCGTGTGAAAAAATCAAAGAATTCTCATATTAGAAGGTTAATGTCACAAAATCAGAGCGGGAATTCCACTGAATCTACGACAGATAAGCCAGAGATGGGGCCAGTTTTACTAAAGCAAGCAAGAGATTTGATTTCATCAGGAGATAATCCAAGGGTGGCTCTTGAATTAGCTCTTCGAGCAATGAGATTGTTTGAGAAGTGTGCTGGTGGGAAACCAAGTTTGGAACTGGTTATGTGTCTGCATGTTACTGCGGCAATATATTCCAGCTTGGGCCAATACCATGAGGCAATACCACTTCTTGAGCACTCTATTGAAATTCCTCTGATTGAGGAAGGGCAAGATCATGCCCTTGCTAAGTTTGCTGGTCACATGCAATTGGGTGACACCTATGCAATGTTGGGCCAGCTTGAAAATTCAATCATGTGCTATAAGACAGGGTTGGAGGTCCAGAGGAAAGTCTTGGGAGAAACAGACCCAAGATTTGGCGAAACTTGTAGGTATGTGGCTGAAGCACATGTTCAAGCGTTGCAATTGGACGAAGCTGAGAGGCTCTGCCAAATGGCTCTTGACATTCATAGAGCAAACGGTTCACCCCCTACTCTTGAAGAGGCGGCTGATAGGAGGCTCATGGGCCTCATATGTGAAGCAAAAGGAAACCATGAAGCAGCTCTTGAGCATCTAATTTTAGCCAGCATGGCAATGGTAGCTAATGGCCAGGAAGTAGAAGTGGCTTCTGTTGACAGCAGCATTGGTGACACATACTTATCTTTGTCTCGGTACGATGAAGCTATTTTTGCTTATCAGAAAGCACTCACAGCTTTTAAGACCAGCAAGGGAGAGAATCATCCAGCCGTGGGATCAATCTTCGTACGTTTGGCTGACTTGTATAACAGGACAGGGAAGATAAGGGAATCAAAATCTTACTGTGAGAGTGCACTTAGAATCTATGAGAAACCTATGCCTGGGGTCCCTCCTGAGGAGATTGCAAGTGGTCTTATGGATATTTCAGCTATCTATGAGTCAATGAATGAGCTTGATCAGGCACTCAAGTTACTTCCCAAGGCACTGGAGATATATAAGGACGCCCCTGGTCGGCAAAGCACGGTTGCAGGAATTGAAGCTCAGATGGGAGTGATGCACTACATGTTGGGAAACTATTCTGAATCTTACAACACTTTGAAGAATGCTATCTCTAAGCTTCGTGCTACCGGAGAGAATAAATCAGCTTTCTTCGCCGTCGCTGTTAATCAAATGGGACTTGCTTGTGTGCAGCGCTATGCATTGGGTGAGGCTACAGAACTGTTTGAAGAAGCAAAGAATATATTGGAACAAGAGTATGGATCCTGTCACCATGAAACTCTTGGGGTGTATAGCAATCTTGCTGGCACCTATGATGCAATAGGCAGGGTGGATGAGGCAATTCAAATTCTGGAGTATGTAGTTGGAATGAGAGAGGAAAAACTTGGGACAGCGAATCCTGATGTGGATGATGAGAAAAGAAGGCTGAGTGAATTGTTGAAGGAAGCTGGCAGAGTTAGGAGCAGAACAGCCAGGTCACTTGAGACCCTTCTTGATGCCAATAATGCTCCTTCTGAAAGCAGTAATCCACAAGGGGAGGCTATCTAG 3441 0.4391 MMKNFHSFKQIPTPNRSARRLSLGEYKRALSWSKYLVSSGAAIKGEGEEEWSADLSQLFIGSKFASGRHSKLYRGIYKQNDVAIKLISQPEEDANLASEVEKQFTSEVALLFRLHHPNIITFFAACKKPPVFCIITEYMAGGSLRGYLHQQQPYSVPLNLVLKLALDIARGMQYLHAKGVLHRDLKSENLLLGEDMCVKVADFGISCLESQIGSAKGFTGTYRWMAPEMIKEKHHTKKVDVYSFAIVLWELLTGLTPFHNMTPEQAAFAVSHKNERPPLPADCPKAFSHLINRCWSSNPDKRPDFDEIVSILEMYSESLEEDPEFFSTYKPPSSNSLLTRFLPKFRLVSSLPWLVIKISCLVLVLTVNLVSEEVKMPGILTNGFEHNERANEMNGNPSPCKETASPIKPQRSSFSSQSPQNTGSNAPALPVDTSIEQLYENVCDMESSDHSPSRQSLGSDGDDESGIDSELCHLVGGPMREVEIMEEEVAERSRGDSVSETSSGKETSANGEKLVQGDEKIQCEKSVPEDEKIQCEMLVQADEKIQSASTSSASSENSNEVSNSQVDLVPETPPKSKPKGKGPPTKPPTDKRNDKPLRKQNNGSTRVKKSKNSHIRRLMSQNQSGNSTESTTDKPEMGPVLLKQARDLISSGDNPRVALELALRAMRLFEKCAGGKPSLELVMCLHVTAAIYSSLGQYHEAIPLLEHSIEIPLIEEGQDHALAKFAGHMQLGDTYAMLGQLENSIMCYKTGLEVQRKVLGETDPRFGETCRYVAEAHVQALQLDEAERLCQMALDIHRANGSPPTLEEAADRRLMGLICEAKGNHEAALEHLILASMAMVANGQEVEVASVDSSIGDTYLSLSRYDEAIFAYQKALTAFKTSKGENHPAVGSIFVRLADLYNRTGKIRESKSYCESALRIYEKPMPGVPPEEIASGLMDISAIYESMNELDQALKLLPKALEIYKDAPGRQSTVAGIEAQMGVMHYMLGNYSESYNTLKNAISKLRATGENKSAFFAVAVNQMGLACVQRYALGEATELFEEAKNILEQEYGSCHHETLGVYSNLAGTYDAIGRVDEAIQILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRTARSLETLLDANNAPSESSNPQGEAI 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1031 1146 ProSiteProfiles TPR repeat profile. 934 967 IPR019734 GO:0005515
Lele17g1031 1146 FunFam Serine/threonine-protein kinase isoform 1 48 140 - -
Lele17g1031 1146 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 426 1132 - -
Lele17g1031 1146 Pfam Protein tyrosine and serine/threonine kinase 61 312 IPR001245 GO:0004672|GO:0006468
Lele17g1031 1146 MobiDBLite consensus disorder prediction 444 462 - -
Lele17g1031 1146 Gene3D Tetratricopeptide repeat domain 507 725 IPR011990 GO:0005515
Lele17g1031 1146 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Lele17g1031 1146 SUPERFAMILY TPR-like 846 966 IPR011990 GO:0005515
Lele17g1031 1146 Gene3D Phosphorylase Kinase; domain 1 48 140 - -
Lele17g1031 1146 MobiDBLite consensus disorder prediction 584 601 - -
Lele17g1031 1146 MobiDBLite consensus disorder prediction 546 638 - -
Lele17g1031 1146 Pfam Tetratricopeptide repeat 729 756 IPR019734 GO:0005515
Lele17g1031 1146 Pfam Tetratricopeptide repeat 691 711 IPR019734 GO:0005515
Lele17g1031 1146 ProSiteProfiles TPR repeat profile. 849 882 IPR019734 GO:0005515
Lele17g1031 1146 MobiDBLite consensus disorder prediction 546 570 - -
Lele17g1031 1146 MobiDBLite consensus disorder prediction 444 470 - -
Lele17g1031 1146 Gene3D Tetratricopeptide repeat domain 836 1017 IPR011990 GO:0005515
Lele17g1031 1146 Gene3D Tetratricopeptide repeat domain 726 835 IPR011990 GO:0005515
Lele17g1031 1146 MobiDBLite consensus disorder prediction 1125 1146 - -
Lele17g1031 1146 Pfam Tetratricopeptide repeat 1058 1099 - -
Lele17g1031 1146 MobiDBLite consensus disorder prediction 487 528 - -
Lele17g1031 1146 SUPERFAMILY Protein kinase-like (PK-like) 48 314 IPR011009 -
Lele17g1031 1146 SUPERFAMILY TPR-like 974 1116 IPR011990 GO:0005515
Lele17g1031 1146 Pfam Tetratricopeptide repeat 848 923 - -
Lele17g1031 1146 SMART tpr_5 849 882 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 934 967 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 1059 1092 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 1017 1050 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 891 924 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 682 715 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 725 758 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 767 800 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 975 1008 IPR019734 GO:0005515
Lele17g1031 1146 SMART tpr_5 809 842 IPR019734 GO:0005515
Lele17g1031 1146 Coils Coil 1100 1120 - -
Lele17g1031 1146 SUPERFAMILY TPR-like 679 830 IPR011990 GO:0005515
Lele17g1031 1146 ProSiteProfiles Protein kinase domain profile. 58 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1031 1146 SMART serkin_6 58 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele17g1031 1146 PRINTS Tyrosine kinase catalytic domain signature 136 149 IPR001245 GO:0004672|GO:0006468
Lele17g1031 1146 PRINTS Tyrosine kinase catalytic domain signature 220 230 IPR001245 GO:0004672|GO:0006468
Lele17g1031 1146 PRINTS Tyrosine kinase catalytic domain signature 174 192 IPR001245 GO:0004672|GO:0006468
Lele17g1031 1146 PRINTS Tyrosine kinase catalytic domain signature 239 261 IPR001245 GO:0004672|GO:0006468
Lele17g1031 1146 PRINTS Tyrosine kinase catalytic domain signature 283 305 IPR001245 GO:0004672|GO:0006468
Lele17g1031 1146 MobiDBLite consensus disorder prediction 616 634 - -
Lele17g1031 1146 Gene3D Transferase(Phosphotransferase) domain 1 141 333 - -
Lele17g1031 1146 MobiDBLite consensus disorder prediction 388 429 - -
Lele17g1031 1146 CDD STKc_MAP3K-like 65 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1031 Lele-ChrLele17 20960988 20970011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1031 31 321 MAP Kinase Kinase Kinase AT1G62400 65.085 2.51e-133 409
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lele17g1031 PK_Tyr_Ser-Thr 4.1e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1795 21 25607738 25610587 Lele17g1031 17 20960988 20970011 CCT
Lele23g0213 23 1427161 1428873 Lele17g1031 17 20960988 20970011 CCT
Lele24g1731 24 22577726 22582017 Lele17g1031 17 20960988 20970011 CCT
Lele17g1031 17 20960988 20970011 Lele19g0526 19 3045137 3053578 hybridization
Lele17g1031 17 20960988 20970011 Lele20g0931 20 15541531 15544756 hybridization