Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele17g1028 ATGCATTCTTCGCTGGTTGATTATAATCGTTCAAGGCTTCTTTTTAGGGTTTTCCAGAATTGTTTGCCCCCTCCCATGGCTATCAGAGGCGTCGATTTTAAGTGGTATGATGGGTTTTTCTTGTCGATGCTTGCTACCAGCGTAGTTATTGTCGCGATTAATTGGAAGCGGTATCATACCTGTACACACCCGTTGCACATATGGATTGTGGTTGACTACTCTACTGTGTTTATCTTTCGGTTGATGATGTTTGTTGATAATGGACTTTCTGCTGGAATGGGTTTAGACTTTGGGTGGCAGCAGAGATATGCTCGCTTCTGTGGACGAGTAGTGGTCCTTTCAATCCTTGCTTTGCTTCTATATCCATTTCTTTGGGCTTGGACTATCATTGGTACCCTCTGGTTCACTAGTGCCAGGAACTGCTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTCAGCTACTGTGGACTGCTTTGCGTTGCTTGCATGTCATTACGCAAGTGGTTGACCCGAAGACAAGCACATTTGTTACGTGCTCAGCAGGGTATTCCTGTGTCTGAATATGGAGTTCTGGTGGACATGATCCGAGTGCCTGATTGGGCATTTGAAGCTGCTGGTCAGGAAACAAGAGGTATGGGCCAAGATGCTGGTGCATATCATCCTGGACTTTACCTAACCCCAGCTCAGAGAGAAGCAGTTGAAGCTTTAATTCAGGAACTCCCAAAGTTCAGGTTGAAGGCTGTTCCAACTGACTGTAGTGAATGCCCCATCTGCTTAGAAGAATTTCACGAGGGGAATGAGGTTCGTGGCCTGCCTTGCGCTCATAATTTTCATGTTGAATGTATTGATGAGTGGCTTCGCCTTAATGTAAAATGTCCTCGTTGCCGCTGTTCAGTATTTCCAAATCTTGACCTTAGTGCTCTGTCCAATCTCCGTCCTGAATCAGAACGATCTTCTGCCAGCGTTGTGACAACAACAAGATATGTGAGAGGTCAACCTTCTAGTCAGAGTTATTTGTTGAGATTACAGGGTCTTCTCCGTCCGGTGCGTTCAGAAATTGCTGGGCCGGCGGGTGGTGAGGTGGGTAATACTTTGGAAAATGCGGAAAACGGTAGTGCTCCTGAAGTGACGCGAAATGCGTCAATTGGACACCAAGGCCCTTCAGTTGAATGCATGCCTGTCAGTCTCTCCTCCGCGCAAAACTAG 1221 0.4676 MHSSLVDYNRSRLLFRVFQNCLPPPMAIRGVDFKWYDGFFLSMLATSVVIVAINWKRYHTCTHPLHIWIVVDYSTVFIFRLMMFVDNGLSAGMGLDFGWQQRYARFCGRVVVLSILALLLYPFLWAWTIIGTLWFTSARNCLPEEGQKWGFLIWLLFSYCGLLCVACMSLRKWLTRRQAHLLRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRGMGQDAGAYHPGLYLTPAQREAVEALIQELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRPESERSSASVVTTTRYVRGQPSSQSYLLRLQGLLRPVRSEIAGPAGGEVGNTLENAENGSAPEVTRNASIGHQGPSVECMPVSLSSAQN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele17g1028 406 Pfam Ring finger domain 259 301 IPR001841 -
Lele17g1028 406 FunFam E3 ubiquitin-protein ligase SIS3 228 306 - -
Lele17g1028 406 SMART ring_2 260 300 IPR001841 -
Lele17g1028 406 ProSiteProfiles Zinc finger RING-type profile. 260 301 IPR001841 -
Lele17g1028 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 306 IPR013083 -
Lele17g1028 406 CDD RING-H2_RNF111_like 259 303 - -
Lele17g1028 406 SUPERFAMILY RING/U-box 242 309 - -
Lele17g1028 406 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 26 385 IPR044793 GO:0004842|GO:0010182
Lele17g1028 406 MobiDBLite consensus disorder prediction 381 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele17g1028 Lele-ChrLele17 20939484 20943540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele17g1028 83 386 C3H Transcription Factor Family AT3G47990 72.638 9.98e-159 447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele21g1798 21 25637754 25639802 Lele17g1028 17 20939484 20943540 CCT
Lele22g1774 22 22956517 22958565 Lele17g1028 17 20939484 20943540 CCT
Lele23g0210 23 1390084 1392132 Lele17g1028 17 20939484 20943540 CCT
Lele24g1735 24 22603580 22605628 Lele17g1028 17 20939484 20943540 CCT
Lele17g1028 17 20939484 20943540 Lele19g0528 19 3069518 3074390 hybridization
Lele17g1028 17 20939484 20943540 Lele20g0926 20 15513938 15517925 hybridization